Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04718 ATGGAATGGACATGGGAGGAAAACCTCCTCTTAAAACACATGGATGAGGATATGATCGAGGGCCAATTGGACAAATTGTCTGATCTTGTTCCCCAAAGATCAACAAATGAAGCAAAAGAGTATAATCAGATGATTGAGGAAAGTCAGTTCGAGGTGCCAATATACTTTTCAAAAAATAATGCTTTGATCGATGAAAACAAAGCTCCTTTGCTTAAGAATAAGATCAACAAAGTGTTTCATTGGAAAGAAGAAGAACACAGGTTATTTCTAGAGGGACTCGAGAAGTATGGCAAGGGAAGATGGAAAGCGATTTCAACATATGTTGGTACAAAAACTTCAACTCAAGTTGCAAGCCATGCTCAAAAGCATTTCATTCGAGTTAATCAACAAAGTGTCGATTCATCAAAAAAGAGTAAAAGAAAAAGTAAACCTGACACTACCTTGTGGAATGGAGATTTCCACCCTCTTCTCAGCCCGAACCGCTCCGTCAACTCACGTTCCATCTGGAATTGGTAG 516 0.3915 MEWTWEENLLLKHMDEDMIEGQLDKLSDLVPQRSTNEAKEYNQMIEESQFEVPIYFSKNNALIDENKAPLLKNKINKVFHWKEEEHRLFLEGLEKYGKGRWKAISTYVGTKTSTQVASHAQKHFIRVNQQSVDSSKKSKRKSKPDTTLWNGDFHPLLSPNRSVNSRSIWNW 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04718 171 ProSiteProfiles SANT domain profile. 81 128 IPR017884 -
Trre6g04718 171 CDD SANT 81 124 IPR001005 -
Trre6g04718 171 NCBIfam myb-like DNA-binding domain, SHAQKYF class 77 126 IPR006447 GO:0003677
Trre6g04718 171 SUPERFAMILY Homeodomain-like 77 128 IPR009057 -
Trre6g04718 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 128 IPR017930 -
Trre6g04718 171 ProSiteProfiles Myb-like domain profile. 81 124 IPR001005 -
Trre6g04718 171 Gene3D - 79 130 - -
Trre6g04718 171 Pfam Myb-like DNA-binding domain 81 123 IPR001005 -
Trre6g04718 171 SMART sant 77 126 IPR001005 -
Trre6g04718 171 PANTHER TRANSCRIPTION FACTOR KUA1 31 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04718 Trre-Chr6 50087697 50088708 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g04718 Myb_DNA-binding 3.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04718 - - tpra:123922541 178.333