Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04714 ATGGCAGCTTTTTCATATCAATACCATCCTTTCCTTGTTGACTCATCATTCATGCTCAACATGAACACTTGTTCTTCTCCATCTTCTTCACAGTTTCACCCTCTTCATCAAGATATAATTAACTGTGTTGATCAACAAAGCTCTAAAGTTACCATCATGAGTGATAATGAACCTTCTTCTGTCACTAAAAACCTTAGTCCTCAATCCTCCATGGTACTCGACAAGCTCGAAACCGGCGATGAGCAAGTTACACAAAAAGTTTCTCCTATGGAGAAGAAGAGGAGAACCAGAAACAATGGACCTTCCTCTACTAAGCAACAATCTCATGATAATAATTTAGTAGAAGGGAGAAACAAGAAACAGAAAAAGAACAAAGAAGAGGAGAATCCAAAAGCAGAGAAGAAAGATCAGAGGAAGTGTTTGGATGAGCCCCCAACTGGATACATCCACGTCAGAGCAAGAAGGGGTCAGGCAACTGATAGCCACAGCCTTGCTGAAAGGGTAAGAAGAGAGAAAATAAGTGAAAGGATGAAGAAGTTGCAACAACTTGTGCCAGGCTGTGATAAGGTAACTGGAAAGGCCCTTATGTTAGATGAAATAATCAATTATGTTCAGTCTTTACAGAATCAAGTGGAGTTTTTGTCAATGAAGCTTACTTCTGTGAATCCTATGTTCTATGACATGGCAACAGACCTAGACACTTTCTTGATTAAACCAGAGAAATTAAATAACTTAGCATCACCATCACAACTATCATCTGTGTCACATTGCAATAGTCCTAAACAAGGCACAAATTTTGGTGATACAACAATCATGAGTACTCCAACCAACATCTTTCAAACTACTAATGACTACCTTTTGGATACTTCAACATCAATTTTTCTTCAAGGCCAGAGCCAGAGGACAAATATTCTCTCTGAGGATGGTAATCATTTTTGGGAGGTAGAAGAGCAGAGACAAAAATTTCTTAATTCACATGGATTCAACAACAACTTATGTTCCTTTCATTAA 1011 0.3828 MAAFSYQYHPFLVDSSFMLNMNTCSSPSSSQFHPLHQDIINCVDQQSSKVTIMSDNEPSSVTKNLSPQSSMVLDKLETGDEQVTQKVSPMEKKRRTRNNGPSSTKQQSHDNNLVEGRNKKQKKNKEEENPKAEKKDQRKCLDEPPTGYIHVRARRGQATDSHSLAERVRREKISERMKKLQQLVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLTSVNPMFYDMATDLDTFLIKPEKLNNLASPSQLSSVSHCNSPKQGTNFGDTTIMSTPTNIFQTTNDYLLDTSTSIFLQGQSQRTNILSEDGNHFWEVEEQRQKFLNSHGFNNNLCSFH 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04714 336 MobiDBLite consensus disorder prediction 75 144 - -
Trre6g04714 336 FunFam Basic helix-loop-helix transcription factor 154 226 - -
Trre6g04714 336 Gene3D - 154 227 IPR036638 GO:0046983
Trre6g04714 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 224 IPR036638 GO:0046983
Trre6g04714 336 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 259 IPR024097 GO:0006355
Trre6g04714 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Trre6g04714 336 MobiDBLite consensus disorder prediction 112 144 - -
Trre6g04714 336 CDD bHLH_AtBPE_like 147 232 - -
Trre6g04714 336 SMART finulus 163 213 IPR011598 GO:0046983
Trre6g04714 336 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04714 Trre-Chr6 50033898 50035933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04714 95 290 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50915 53.695 8.51e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g04714 HLH 2.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04714 - - gmx:100806696 434.106