Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04709 ATGGCAATAATAACTATGCTATTTCTTCATCTAAGTTTTTTCATCTTGAAAGTGTTTTCTTTCTCTTCTCATTCTCATGCAGATAGAATTGTTACTCTTCCTGGACAACCACAAATAGCCTTTCAACAATTCTCAGGATATGTCACAGTTGATAACAAAAAACACAAATCACTCTTTTACTATTTTGCTGAATCAGAAACTGATCCATCTTCAAAACCTCTTGTTCTTTGGCTCAATGGTGGACCTGGTTGTTCTTCTCTAGGAGTAGGTGCATTCTCAGAAAATGGACCCTTTAGACCAAATGGTGAATTTCTTATTAAAAATGAACATAGTTGGAATAAAGAGGCAAATATGCTTTATTTGGAGACACCAATTGGAGTTGGATTTTCCTATGCCAAAGGTAGTTCTGCTTATACAACAACAGTGAATGATGAAGAAACAGCAAGGGACAATCTTGTATTCTTGCAACGTTGGTTCAATAAGTTTCCACAATATAGAAATAGAGATTTGTTTCTAACTGGTGAAAGTTATGCAGGTCATTATATTCCTCAACTTGCAAAGCTTATGATTGAAATGAACAAAAGAAACAAAATATTCAATCTCAAAGGCATAGCTTTGGGAAATCCAGTGCTAGAATATGCTACTGATTTTAATTCAAGGGCTGAGTTTTTTTGGTCACATGGATTAATATCAGATGCAACTTATAACATGTTCACTACAGTATGTAATTACTCACGTTATGTAAGTGAGTACAATAGAGACTCAGTTTCATCTCTTTGTTCAAAGGTTATGGGGTTGGTGAGTAAAGAAACTAGTAGATTTGTGGATAAATATGATGTCACTCTTGATGTTTGTATTTCCTCTGTGCTGTCACAATCCAAAGTTATTTCTCCACAGCCTCAACAAGCAAATGAGATGATAGATGTGTGTGTGGATGATAAGGTTACAAATTACTTAAACAGGAGAGATGTGCAAGAGGCACTTCATGCAAAACTTGTCGGAGTTCGCAAGTGGGATGTCTGCAGCAATGTTCTTGACTATGATGTCCTTAACTTGGAAGTGCCAACACTTCCTATTGTTGGATCATTGATTAAAGCTGGAGTTAGAGTCCTAATTTACAGTGGTGATCAAGATTCAGTGATTCCACTGACTGGAAGCAGAACCTTAGTTCAAAAATTGGGAAGACAATTAGGACTGAATACAACAGTACCTTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGATGGACTCAAGTTTATGGCAATATTCTCTCATTTGCCACTGTCAGAGGTGCTGCACATGAAGCTCCTTTCTCACAGCCTGAAAGATCACTTGTGCTATTCAAATCATTCTTGGAAGGAAGCCCTTTACCTGAAGTTTTCTGA 1389 0.3708 MAIITMLFLHLSFFILKVFSFSSHSHADRIVTLPGQPQIAFQQFSGYVTVDNKKHKSLFYYFAESETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEFLIKNEHSWNKEANMLYLETPIGVGFSYAKGSSAYTTTVNDEETARDNLVFLQRWFNKFPQYRNRDLFLTGESYAGHYIPQLAKLMIEMNKRNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDATYNMFTTVCNYSRYVSEYNRDSVSSLCSKVMGLVSKETSRFVDKYDVTLDVCISSVLSQSKVISPQPQQANEMIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYDVLNLEVPTLPIVGSLIKAGVRVLIYSGDQDSVIPLTGSRTLVQKLGRQLGLNTTVPYRVWFEGQQVGGWTQVYGNILSFATVRGAAHEAPFSQPERSLVLFKSFLEGSPLPEVF 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04709 462 Gene3D alpha/beta hydrolase 23 459 IPR029058 -
Trre6g04709 462 Pfam Serine carboxypeptidase 35 455 IPR001563 GO:0004185|GO:0006508
Trre6g04709 462 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 31 442 IPR001563 GO:0004185|GO:0006508
Trre6g04709 462 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Trre6g04709 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Trre6g04709 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Trre6g04709 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Trre6g04709 462 PRINTS Carboxypeptidase C serine protease (S10) family signature 425 438 IPR001563 GO:0004185|GO:0006508
Trre6g04709 462 SUPERFAMILY alpha/beta-Hydrolases 31 459 IPR029058 -
Trre6g04709 462 FunFam Carboxypeptidase 23 459 - -
Trre6g04709 462 FunFam Carboxypeptidase 356 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04709 Trre-Chr6 49976729 49980205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04709 318 458 Calmodulin-binding Proteins AT2G22960 29.078 7.93e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04709 K16297 - gmx:100795668 821.617