Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04708 ATGACAAAAAACCAACAACACCTTCTAACACCAACACCAATCATTAACCAAAACCAGGGTAAAGAGCAGTTGGACTCTGAGGGATCATCACCTCTAACCGTTACTTCCCGGGTTTTGTATATGTTGGGAGATATCACTGCAGGGCCTGCACTTATGTTCACTCAATGGCTTCAATCTGTTCGTAAACGCGCTTCCAATCACCGTTCCTCTGGATTCCCTCGCTCTTCTTCCACCATCGCGCCCTTTTGTTTTGGAGAATATGCGGAGGATGCAAAAATTGATGAGATGCCTGATCAAACTGAAATTAGTTTGTGGGATAGGCTTGGTAAAGCTGAGATGTTGGACATTGAATCAAGTTCCTTTTCTTGGGATATGCTCTCTTCACTTCACCACACTGAGCATACTAGTAGCAATGAACATTCCGAGGATGAAATGAACAAAGCTCTTGAGCTAACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCCTTTTCAATGTCCATGGGAGTGACGATGCATCTCCAAAAGAAGCAGCAGCTGTCATAAAGATATCTTCGTCAAGAATGGCAACACAGTCCGAACGACTTGGATATGAATTTGCCAAGTGGTTGGGAGTCCAAACGCCACAGGCTAGAGTCATTCACAATACCAGTTTAGAATGGCTCCAAATAAAAGAAGCTGCAGAAAAAGCAAGGGATGCAGCAAGTTTTGAGCGTGATGCAATTGGTGAAACAACATGTTCAGAGCTTTTGGAAGCACTTGAGCTTAGCCGGTGTCTCTTGTTTATGAGTTACGTACATGGTTCACCTTTGCTTGAAAGCTGTAGCGCATTTGAATCACGGGACTCTGCAGAAACAGTATCAGCAGCCCTTGGCAGGGTAATGATGCTAGATCTTGTTATCAGAAATGAAGATAGGCTTCCATGCCGTCAACTTAGATGGCGTGGGAACCCTGCCAATTTGTTATTGGCTGACAAGACAATCTCTTCAAATTTAGATACAATAGGAGAAGCCTTTGATTTTGACATAAACCGATATGGGCCCGGGGTGGCTGGGACGCTTCAGAAAGAAAGAAGGTCAACTTCAGTAGTTGGCAGATCGAGTTCTCACAATCATGGAATAAGACCACAAGGCTCTCTTCTTTCACAGATAAGTGAATCATCTGATGACATGTGCCTTAAAAGTCAAACTTTAGGAGAATCATTGTTTATTGGCTCCAAGATCGTGGCTATTGACTCCGGTGTTCCTCGTCGACCCCCTGCAGGAAAACGTGCAGATGATCAGGTCAATTATCCTAAGTTAGTTGAGTTAGTATTAAATAGCTCTGAATTTTCCTCTTGCTTGTTATATGATATAACTGGAGGGAAATTAGGAAGTCCTCCCTTAGAAGACATAAATACAACAGTCGATGTACAAGGGAGTGAAGTAACATCAGTAGTTCACGAGTTCCGCAGTGGTTTTCGTGCTGCTCTTAGGGATCTTCAAGGATTTCATATATTCCTACTTACACTTCACAAAAAACTTGATAATGTGTTACGATCATTTAATAATACTATAAGCAAAATACCACTGGGGGACTCTGAAAAAGAAGATTCACCTTCACCCGCTACTGGTAGTTGTCTCTCTCCAACAAGTAAGGAAAGATGTTCTAATGATGGCCATCGAGATTTGAGTGATACAGATTCACAGAGATCTGCTCCAAGGCCATCACCATCTTCAGGCAATAGAGATTTTTGTGATTCTGCTTCTCCTATGTCAAGAGAAGGTTGGCATGGAAAATCCTCTAAAGGAAGCGTGGAGCCATTGCTTGGTTCCCGTTTTACAGCTAAGCTCCGTGACTTTCATAAATTTGCCAAGGTTGATGCAGAATCTTATAAAGAATTGGAACACTGGAATGAAATGCTTAAAAATGATGCTATCAAGTTTTGCCAGGAGAACAATTTCAATTCAGGATTTTTTGAGGGTAGTGATAGCAACACTGTTGTTGATGCATATGAATTGAAGGTCAGACTTGAGCATATCCTTGAAAGGATTGCATTGATATCTGAGGCTGCAAATACAGAAAGACCATCTGCTGTTACAAGTAATTTGTTCATCGGTGGAGCACAATCTGCAAGATCTGTATACACAATGCAACACTTGGGAATCACTCATATTTTGTGTTTGTGTACTAATGAAATTGGACAATCAGATTCTCAATTCCCTGATCTGTTCACTTACAAAAATTTCTCTGTGTGTGATACTGAGAATTCTGACATCGGCGTCTTATTTGACGAAGCTTGTGATTTTATAGAAGATGTTGAGAGAGGAGGTCAGAGAGTTTTAGTTCATTGCTTCGAAGGGAAAAGCAGAAGTGTCACTGTGCTCCTTGCTTACTTGATGCTCAGAAAGAACTTTACATTATTAGAAGCATGGAATGCTATGAGAAAAGTTCACCGTCGAGCGCAGCCTAATGATGGTTTTGCAAAGATCTTACAAGAACTTGATCATAAACTGCATGGGAAAGTTTCGATGGAGTGGCAGCGGCGGAAACCAACAATGAAAGTTTGTCCTATATGTGGCAAGAATGCTGGACTGAGTAGCAGCTCACTTAAGCTACATCTTCAGAAATCTCATAAAAGACTATCATCAGGGAGTGTTGATAGTGCCATGACAATGGAAATCCAAAAGGCATTAACCACTTTGAATATTAGCCGTGGTGGCAGTGTGAGCCCCAAACAAAGGCAAACTCACTCAATGACAGACTAA 2745 0.4168 MTKNQQHLLTPTPIINQNQGKEQLDSEGSSPLTVTSRVLYMLGDITAGPALMFTQWLQSVRKRASNHRSSGFPRSSSTIAPFCFGEYAEDAKIDEMPDQTEISLWDRLGKAEMLDIESSSFSWDMLSSLHHTEHTSSNEHSEDEMNKALELTVNSGGVVFFALFNVHGSDDASPKEAAAVIKISSSRMATQSERLGYEFAKWLGVQTPQARVIHNTSLEWLQIKEAAEKARDAASFERDAIGETTCSELLEALELSRCLLFMSYVHGSPLLESCSAFESRDSAETVSAALGRVMMLDLVIRNEDRLPCRQLRWRGNPANLLLADKTISSNLDTIGEAFDFDINRYGPGVAGTLQKERRSTSVVGRSSSHNHGIRPQGSLLSQISESSDDMCLKSQTLGESLFIGSKIVAIDSGVPRRPPAGKRADDQVNYPKLVELVLNSSEFSSCLLYDITGGKLGSPPLEDINTTVDVQGSEVTSVVHEFRSGFRAALRDLQGFHIFLLTLHKKLDNVLRSFNNTISKIPLGDSEKEDSPSPATGSCLSPTSKERCSNDGHRDLSDTDSQRSAPRPSPSSGNRDFCDSASPMSREGWHGKSSKGSVEPLLGSRFTAKLRDFHKFAKVDAESYKELEHWNEMLKNDAIKFCQENNFNSGFFEGSDSNTVVDAYELKVRLEHILERIALISEAANTERPSAVTSNLFIGGAQSARSVYTMQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDTENSDIGVLFDEACDFIEDVERGGQRVLVHCFEGKSRSVTVLLAYLMLRKNFTLLEAWNAMRKVHRRAQPNDGFAKILQELDHKLHGKVSMEWQRRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLNISRGGSVSPKQRQTHSMTD 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04708 914 MobiDBLite consensus disorder prediction 521 597 - -
Trre6g04708 914 Gene3D Protein tyrosine phosphatase superfamily 671 843 IPR029021 -
Trre6g04708 914 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 757 809 IPR000387 GO:0016311|GO:0016791
Trre6g04708 914 CDD DSP 689 826 - -
Trre6g04708 914 Gene3D - 270 523 IPR036940 -
Trre6g04708 914 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 17 913 IPR035010 GO:0004721|GO:0009737|GO:0043622
Trre6g04708 914 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g04708 914 Pfam Dual specificity phosphatase, catalytic domain 697 827 IPR000340 GO:0008138|GO:0016311
Trre6g04708 914 SMART dsp_5 688 830 IPR020422 GO:0006470|GO:0008138
Trre6g04708 914 MobiDBLite consensus disorder prediction 547 561 - -
Trre6g04708 914 ProSiteProfiles Dual specificity protein phosphatase domain profile. 688 833 IPR020422 GO:0006470|GO:0008138
Trre6g04708 914 FunFam Dual specificity protein phosphatase PHS1 660 834 - -
Trre6g04708 914 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 688 833 IPR029021 -
Trre6g04708 914 MobiDBLite consensus disorder prediction 562 579 - -
Trre6g04708 914 Pfam Actin-fragmin kinase, catalytic 101 339 IPR015275 -
Trre6g04708 914 MobiDBLite consensus disorder prediction 531 546 - -
Trre6g04708 914 SUPERFAMILY Protein kinase-like (PK-like) 55 427 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04708 Trre-Chr6 49964018 49969462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04708 27 899 Protein tyrosine phosphatase (PTP) family AT5G23720 63.187 0.0 1054
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04708 K14165 - gmx:102661225 1254.2