Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04703 ATGAACAACAACAACAATGCTTGGATAGAAGAAAGAGAAGACGAAAACACAACAAACCCAAACACTCCTTCATCAGCTTCTCCTTTCATCCATAACAACAACAATACACAACATTTCTCTTCTTTCATCAAACCCATGCTTCAAATCAACGATGAAGATGCTGAATGGTACATCAGAGACATGGCTTTTCCTCCTAACTTAGACAACGTTTTACTCAACAACGTTGATTCTGTTTCTTCTTCTTCATGTTCACCTTCTTCTTCTCTTTTCAACTCACTTGATCCTTCACCTTCGAATCTTCAGTTTTTTCTTCCTCCAAATCATAAACCCATTAACAACACTAACACCCTTTCTTCTCTTCTCAACAACAACAACAACAACCCTTTTGAAATCCCTTCTGAACTTGGTTTTCTTGATCATCAAGCTTCATTTCTGGGTAGTTTTGATTTCACTTCCAAAAATCAGTTACCAGCTTCTACTACACAGTTGAGCTTACCCCATTTGCCCCAATTGCCTCAAATCAACAATGGCTTCAATGGTTTCATGGGGTTTCAGAACTCTCAAGAGGGTTATGGAAAATCACTGTTTTTGAGACCACTTGATTCTCTGCCTTCTTCTGGAACACAGCCTACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACATGGGCAAGTGTGAAATTGGTGGAGGGAGTGATAAGAAAAGGAAGATTAGCGGTGGAGATGAAATTGATGATTTGAGTTTAGATGGGTCTGGTTTGAATTATGATTCTGATGATTTAACTGAGAGTAACAATTTTGGTAAGATGGAAGAGATTAATGGAAAAAACTGTGGAAATGGTTCTAATGGGAATAGTACTGTAACTGGTGGTGTTGATCAGAAAGGGAAAAAGAAAGGAATCCCTGCTAAGAATTTGATGGCCGAACGTCGTCGCAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTTTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTCCATCCTTTGACACCGAATCCGTCTTCGTTGCCGAGTCGTATCAAAGAAGAACTATGTCCCAGCTCATTGCCAAGCCCTAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTGAATATCCACATGTTTTGTGCTCGCAAACCTGGTCTTTTGCTGTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGATATATTTATAGCCGAGCAATGCAAAGAAGGTCAAGATATCCATCCAGAGGAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGGCCTAA 1476 0.4085 MNNNNNAWIEEREDENTTNPNTPSSASPFIHNNNNTQHFSSFIKPMLQINDEDAEWYIRDMAFPPNLDNVLLNNVDSVSSSSCSPSSSLFNSLDPSPSNLQFFLPPNHKPINNTNTLSSLLNNNNNNPFEIPSELGFLDHQASFLGSFDFTSKNQLPASTTQLSLPHLPQLPQINNGFNGFMGFQNSQEGYGKSLFLRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGGGSDKKRKISGGDEIDDLSLDGSGLNYDSDDLTESNNFGKMEEINGKNCGNGSNGNSTVTGGVDQKGKKKGIPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPNPSSLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFIAEQCKEGQDIHPEEIKAVLLDSAGFNGMA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04703 491 MobiDBLite consensus disorder prediction 361 386 - -
Trre6g04703 491 CDD ACT_UUR-ACR-like 420 480 - -
Trre6g04703 491 SMART finulus 306 355 IPR011598 GO:0046983
Trre6g04703 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 367 IPR036638 GO:0046983
Trre6g04703 491 MobiDBLite consensus disorder prediction 227 244 - -
Trre6g04703 491 Gene3D - 294 364 IPR036638 GO:0046983
Trre6g04703 491 CDD bHLH_AtAMS_like 303 368 - -
Trre6g04703 491 MobiDBLite consensus disorder prediction 276 299 - -
Trre6g04703 491 MobiDBLite consensus disorder prediction 225 244 - -
Trre6g04703 491 MobiDBLite consensus disorder prediction 276 292 - -
Trre6g04703 491 MobiDBLite consensus disorder prediction 1 31 - -
Trre6g04703 491 FunFam BHLH transcription factor 296 364 - -
Trre6g04703 491 Pfam Helix-loop-helix DNA-binding domain 307 349 IPR011598 GO:0046983
Trre6g04703 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 300 349 IPR011598 GO:0046983
Trre6g04703 491 Coils Coil 339 363 - -
Trre6g04703 491 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 172 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04703 Trre-Chr6 49941941 49944431 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04703 57 464 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.174 3.56e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g04703 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04703 - - gmx:100217341 523.087