Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04702 ATGATTTCCAGAATGAACAACAACAACAATGCTTGGATAGAAGAAAGAGAAGACGAAAACACAACAAACCCAAACACTCCTTCATCAGCTTCTCCTTTCATCCATAACAACAACAATACACAACATTTCTCTTCTTTCATCAAACCCATGCTTCAAATCAACGATGAAGATGCTGAATGGTACATCAGAGACATGGCTTTTCCTCCTAACTTAGACAACGTTTTACTCAACAACGTTGATTCTGTTTCTTCTTCTTCATGTTCACCTTCTTCTTCTCTTTTCAACTCACTTGATCCTTCACCTTCGAATCTTCAGTTTTTTCTTCCTCCAAATCATAAACCCATTAACAACACTAACACCCTTTCTTCTCTTCTCAACAACAACAACAACAACCCTTTTGAAATCCCTTCTGAACTTGGTTTTCTTGATCATCAAGCTTCATTTCTGGGTAGTTTTGATTTCACTTCCAAAAATCAGTTACCAGCTTCTACTACACAGTTGAGCTTACCCCATTTGCCCCAATTGCCTCAAATCAACAATGGCTTCAATGGTTTCATGGGGTTTCAGAACTCTCAAGAGGGTTATGGAAAATCACTGTTTTTGAGACCACTTGATTCTCTGCCTTCTTCTGGAACACAGCCTACTCTGTTTCAGAAAAGAGCAGCACTGAGAAAAAACATGGGCAAGTGTGAAATTGGTGGAGGGAGTGATAAGAAAAGGAAGATTAGCGGTGGAGATGAAATTGATGATTTGAGTTTAGATGGGTCTGGTTTGAATTATGATTCTGATGATTTAACTGAGAGTAACAATTTTGGTAAGATGGAAGAGATTAATGGAAAAAACTGTGGAAATGGTTCTAATGGGAATAGTACTGTAACTGGTGGTGTTGATCAGAAAGGGAAAAAGAAAGGAATCCCTGCTAAGAATTTGATGGCCGAACGTCGTCGCAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAACTTTTGCAAAGGATCAATGACCTTCATAATGAGTTGGAATCAACACCTGCTGGATCTTCACTAACACCTGCTTCAAGCTTCCATCCTTTGACACCGAATCCGTCTTCGTTGCCGAGTCGTATCAAAGAAGAACTATGTCCCAGCTCATTGCCAAGCCCTAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGGGAAGGAAGGGCTGTGAATATCCACATGTTTTGTGCTCGCAAACCTGGTCTTTTGCTGTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAAGCTGTTATAAGCTGTTTCAATGGATTTGCTATGGATATATTTATAGCCGAGCAATGCAAAGAAGGTCAAGATATCCATCCAGAGGAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTTCAATGGCATGGCCTAA 1488 0.4079 MISRMNNNNNAWIEEREDENTTNPNTPSSASPFIHNNNNTQHFSSFIKPMLQINDEDAEWYIRDMAFPPNLDNVLLNNVDSVSSSSCSPSSSLFNSLDPSPSNLQFFLPPNHKPINNTNTLSSLLNNNNNNPFEIPSELGFLDHQASFLGSFDFTSKNQLPASTTQLSLPHLPQLPQINNGFNGFMGFQNSQEGYGKSLFLRPLDSLPSSGTQPTLFQKRAALRKNMGKCEIGGGSDKKRKISGGDEIDDLSLDGSGLNYDSDDLTESNNFGKMEEINGKNCGNGSNGNSTVTGGVDQKGKKKGIPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPAGSSLTPASSFHPLTPNPSSLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFIAEQCKEGQDIHPEEIKAVLLDSAGFNGMA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04702 495 CDD ACT_UUR-ACR-like 424 484 - -
Trre6g04702 495 MobiDBLite consensus disorder prediction 365 390 - -
Trre6g04702 495 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 307 371 IPR036638 GO:0046983
Trre6g04702 495 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Trre6g04702 495 MobiDBLite consensus disorder prediction 231 248 - -
Trre6g04702 495 CDD bHLH_AtAMS_like 307 372 - -
Trre6g04702 495 SMART finulus 310 359 IPR011598 GO:0046983
Trre6g04702 495 MobiDBLite consensus disorder prediction 280 303 - -
Trre6g04702 495 MobiDBLite consensus disorder prediction 229 248 - -
Trre6g04702 495 Pfam Helix-loop-helix DNA-binding domain 311 353 IPR011598 GO:0046983
Trre6g04702 495 Coils Coil 343 367 - -
Trre6g04702 495 MobiDBLite consensus disorder prediction 280 296 - -
Trre6g04702 495 Gene3D - 298 368 IPR036638 GO:0046983
Trre6g04702 495 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 184 492 - -
Trre6g04702 495 FunFam BHLH transcription factor 300 368 - -
Trre6g04702 495 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04702 Trre-Chr6 49941941 49944443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04702 61 468 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 52.174 4.06e-114 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre6g04702 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04702 - - gmx:100217341 528.865