Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04701 ATGTTTCGTCAACAGCTTCAGAGTTTGGAAGAAAGTTCAGAATCGTTACGTTCCAGATGTTGGAAGTTCTATAAAGGATGTAGAAAATACACGGAAGGGCTAGGAGAGGCATATGATGGAGACATTGGATTTGCAACTGCCCTTGAAAATTTTGGAGGAGGCCATAGTGACCCTCTTTTTGTAACTTTGGGAGGACCTGTAATGACCAAATTCGCTATTGCTTTGAGAGAAATCAGTACACACAAGGAACTTCTTCGGTCACAGATCGAGCATATGCTGAATGACCGGTTACTGAACATCCTAAATGTCGAAATCCTTGATGTCAAGGAAGCTCGGAGGCGTTTCGATAAAGCTTCCCAAGTATATGATCAGGCACGTGAGAAGTTTATGTCGTTGAGAAAAAGCACCAAGTTTGATGTTGCAGCTGTGATAGAAGAGGAATTGCACAATGCGAGAACAGTATTCGAGGAAGCTCGTTTCAATCTGGTTGGTGCTCTTCATAATATTGAGGCAAAGAAGAGATTTGAGTTTTTGGAGGCCGTCACTGGAGTTATGGACGCTCATCTTCGATACTTTCAACAGGGATATCAGCAGTTACAAGAGCTGGAGCCTTTCATTATTGAGGTTTTGGCTTATGCACAAAAAGCAAGAGAAAGTTACAATGAGGAACAGATTTCTCTTTGTGAAAGAATGGTAGAGTACAAAAAACAAAGTTACCAAGAAAGTCGATTGTCCTTGAATGGCCCTTATGGCTCTCCTAGTGCAGACAATGCGCATATGCATCCTTTTTCTCGGATATCTAGTAGTGTGATAGATGCAGTAGCTGAATCGGCTGCAAATGGAAAGGTTCGAGTCATTCGACAAGGGTATCTTTCAAAACGTTCCTCGAATTTGAGGGGCGACTGGAAGAGAAGATTTTTTGTTCTTGATAGCCTCGGAACGCTTTACTACTACCGTAAACCATTACAAGTAAATAGTTTCAATCAGCAATGTACACAGAGGAATTGTGCCAATGAAAACAGTGCTGGCATTCTGAGTAGGTTACTTTCTTCACAATACCATGTAGTTGTTCCTGATGAAAAATCTGTAGCACGTCACACGGTGAACCTGCTCACATCAACAATCAAGATTGATGCTGAGCAATCAGATTTAAGGTTCTGCTTCAGGATTATTTCACCCTCAAAGATGTATACTTTGCAGGCAGAAAATGCCCTCGACCAGATGGATTGGATGGAAAAAATAAACGGAGTCATTGCGTCTTTGTTGTCTGTACAAACACTAGGTGTAAAGTATAAATCAGCTGACTCAGAAAGCTGTGACAGCGACTCTTCCAACAACACCGACTCATTACAAAGTTTACAAGACCATGATCAATTAATGAGTGGAGAATTTGCACAGAAGACCTCCACCATTAATAAATCGTCTGAAAAACCATCTGAAGACATGCAGAAGAATAAGCAGTGTGTAAAAGTTGAACAGCCAATTGATATTCTAAGAAAGGTTAGCGGGAATGATAAATGTGCCGATTGCGGTAAACCTGAACCAGACTGGGCATCCTTAAACCTTGGTATCCTTGTATGCATTGAATGTTCCGGCATTCACCGTAATCTTGGTGTACATAAATCAAAAGTACGATCACTGAAACTTGATGTCAAAGTGTGGGATTCCTCCGTCTTAACTATGTTTCAGTCACTAGGAAATCTCTTTGCGAACTCAGTCTGGGAGGAGCTTTTGCATGCAGCAACAAGTACTTCACAAACTGATGACACTCCTTACGGTTCATCCAAATCCGATAAAAACAAGTTAGGTTATGCAAAAAAACCAGAACTTGATGATCCTATTTCACTAAAGGAAAGATTCATTCATGCAAAGTATTCGGAGAAAGTCTTTGTTCGACAGATGCCAAAAAGTCACCACCTTCTTTCAGTGGCACAACAAGTGATGGAATGCATCTGTGCCAATGACAAGAAAGCAGTGTATCGGCACATTGTCAAATCAGATGTGGATATCAATTCTGTTAGTGGAGACATAATATCCGGCTATTTTTCTAATATGTCGTCTTCAAGTGATTCAAACAAATCTTCTACAAGTAAAACTCAGATAATGGAGGACATGCACGAAGGTTCTAGTGTGCTTCACTTGGCTTGCCTAACAAGTGATGCTGGAATGATAGAGCTTCTTCTACAATATGGCGCAGATGTAAATGCTATTGATTCGAAAGGTAGGACACCGCTGCATTACTGCATTTTGAGAGGAAAGACGGCAGCTGCCAGATTGTTTATTACAAGGGGGGCCAATCCACTTGCTGTAGATAAAGACGGCAACACTCCTCTTATGCTTGCACCAGAACCCGGGGCTATTGGCAAAGACATTCTTGCTCTCTTATCAAGTAGATGA 2397 0.4126 MFRQQLQSLEESSESLRSRCWKFYKGCRKYTEGLGEAYDGDIGFATALENFGGGHSDPLFVTLGGPVMTKFAIALREISTHKELLRSQIEHMLNDRLLNILNVEILDVKEARRRFDKASQVYDQAREKFMSLRKSTKFDVAAVIEEELHNARTVFEEARFNLVGALHNIEAKKRFEFLEAVTGVMDAHLRYFQQGYQQLQELEPFIIEVLAYAQKARESYNEEQISLCERMVEYKKQSYQESRLSLNGPYGSPSADNAHMHPFSRISSSVIDAVAESAANGKVRVIRQGYLSKRSSNLRGDWKRRFFVLDSLGTLYYYRKPLQVNSFNQQCTQRNCANENSAGILSRLLSSQYHVVVPDEKSVARHTVNLLTSTIKIDAEQSDLRFCFRIISPSKMYTLQAENALDQMDWMEKINGVIASLLSVQTLGVKYKSADSESCDSDSSNNTDSLQSLQDHDQLMSGEFAQKTSTINKSSEKPSEDMQKNKQCVKVEQPIDILRKVSGNDKCADCGKPEPDWASLNLGILVCIECSGIHRNLGVHKSKVRSLKLDVKVWDSSVLTMFQSLGNLFANSVWEELLHAATSTSQTDDTPYGSSKSDKNKLGYAKKPELDDPISLKERFIHAKYSEKVFVRQMPKSHHLLSVAQQVMECICANDKKAVYRHIVKSDVDINSVSGDIISGYFSNMSSSSDSNKSSTSKTQIMEDMHEGSSVLHLACLTSDAGMIELLLQYGADVNAIDSKGRTPLHYCILRGKTAAARLFITRGANPLAVDKDGNTPLMLAPEPGAIGKDILALLSSR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04701 798 SMART ANK_2a 740 769 IPR002110 GO:0005515
Trre6g04701 798 SMART ANK_2a 707 736 IPR002110 GO:0005515
Trre6g04701 798 SUPERFAMILY PH domain-like 197 418 - -
Trre6g04701 798 Gene3D Arf GTPase activating protein 471 637 IPR038508 -
Trre6g04701 798 PANTHER CENTAURIN/ARF 1 796 IPR045258 GO:0005096
Trre6g04701 798 PRINTS HIV Rev interacting protein signature 504 523 IPR001164 GO:0005096
Trre6g04701 798 PRINTS HIV Rev interacting protein signature 523 540 IPR001164 GO:0005096
Trre6g04701 798 PRINTS HIV Rev interacting protein signature 546 567 IPR001164 GO:0005096
Trre6g04701 798 SUPERFAMILY Ankyrin repeat 650 785 IPR036770 -
Trre6g04701 798 ProSiteProfiles Ankyrin repeat profile. 740 772 IPR002110 GO:0005515
Trre6g04701 798 Gene3D - 638 796 IPR036770 -
Trre6g04701 798 Pfam Putative GTPase activating protein for Arf 495 632 IPR001164 GO:0005096
Trre6g04701 798 SMART arf_gap_3 492 638 IPR001164 GO:0005096
Trre6g04701 798 SUPERFAMILY BAR/IMD domain-like 1 307 IPR027267 -
Trre6g04701 798 MobiDBLite consensus disorder prediction 584 604 - -
Trre6g04701 798 Pfam Ankyrin repeats (3 copies) 712 782 IPR002110 GO:0005515
Trre6g04701 798 ProSiteProfiles Ankyrin repeat region circular profile. 707 738 - -
Trre6g04701 798 Pfam BAR domain of APPL family 2 223 IPR004148 GO:0005515|GO:0005737
Trre6g04701 798 Gene3D Arfaptin homology (AH) domain/BAR domain 1 240 IPR027267 -
Trre6g04701 798 ProSiteProfiles ARF GTPase-activating proteins domain profile. 492 638 IPR001164 GO:0005096
Trre6g04701 798 ProSiteProfiles PH domain profile. 284 419 IPR001849 -
Trre6g04701 798 Coils Coil 108 128 - -
Trre6g04701 798 Gene3D - 277 429 IPR011993 -
Trre6g04701 798 Pfam PH domain 285 418 IPR001849 -
Trre6g04701 798 SUPERFAMILY ArfGap/RecO-like zinc finger 492 633 IPR037278 -
Trre6g04701 798 ProSiteProfiles Ankyrin repeat profile. 707 739 IPR002110 GO:0005515
Trre6g04701 798 SMART 5bar 1 208 IPR004148 GO:0005515|GO:0005737
Trre6g04701 798 ProSiteProfiles Ankyrin repeat region circular profile. 740 766 - -
Trre6g04701 798 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 474 639 - -
Trre6g04701 798 CDD PH_ACAP 287 423 - -
Trre6g04701 798 CDD BAR_SFC_plant 5 205 IPR035670 -
Trre6g04701 798 SMART PH_update 285 421 IPR001849 -
Trre6g04701 798 CDD ArfGap 495 625 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04701 Trre-Chr6 49934603 49940339 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04701 496 632 C2H2 Transcription Factor Family AT4G21160 38.406 1.66e-19 89.0