Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04695 ATGAACCAGAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTGAGAGAAATGATGGATTACGGAAGCCGGAATCCGTTCATGGTGATCATCCACAAGGAAAGGGTGAAATTGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTCGAAAGAAATGCAAAAAATGGCTTGCCCATGTCACAGACTAGTCTTTCTGGGGAAATTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGTGCTGAAGGATTCAAAGGAATCATTGAATCATCATCCAAGATCATGGTCTGATGTGCACAGGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGGAACAAGATTTTCACCAATGCAGGCTCACGTGAAAGCAGTCTATTCTCAAGCTCACTGTCCGATATGTTTAGCCAAAAGTTGAGGTTATTGGGAAACGGTGGTCTGTCTGATCAGAACATTAATGTTGGTTTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGAGATCTCCTTCCTGACGAAGATGATCTGTTTTCTGGTGTCACTGATGCTTTAGGAAGCAGTGCTCATGCCAAACCAACTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGACGAACTTCTAGTTTCAGGAAAAAGAATCAGTGGCTTGGAATTGGATGGAGATTCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTACTAGCAATGAAGAAGACTCGGATATAAAGGCTCTATTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTCCAAGCATCAAGGGTTTGTTATGGTTTCATATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAATTCTAGGAATCTGGATATACATTATTCATTTCCAAAGGGAAATGCTTCAGAGAAGGATATTAGCCACGGTACACTGATGATATCTGGTCTTGACCCATCTGTTTTGAAAGAGGAACTAAAACATATTTTTGGGTTTTATGGAGAAATCAAAAAAATCTATGAATATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAGCTTGAACCTGGCCATCCTAAGAATGCAACACGTATGATGAAGCCGTCTCAAAAGGCACAAGACGAATCTGATCTTGGTCATAATCTCAATGGCATCTTATTTTTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCATAGATTCCAATCTGCATCACAGCTGCCTTTGAATGCTTTCATTGATAACACAATTTTTCACAGTATTTCCAACACCGCAAGAGGAGCATCTCCTGTAACAGTATCTGGTGCTCGTGAGTCCAGTAACGCTGTTGATGCAATGAAATTTGCATCTATTCCAAGATTCCATCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAATACCATTAAAATGGCTGCCAATATTGGAAGTGGATCCACAGAAGCATCTGACAGAAGGCACATTCAGGGAATTAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGAGTCTTCCTCACCACCAGCTTTATCATATGTGGAATGGCTCAAACATGCGTCAACAATCTCCATCAAATGCTATGGTTTGGCAGAAAACACCATCTTTTGTTAATGGTGCTGGTGCTCCAGGTCTTCCACAGATACCCAGCTTTCCCAGGACACCGGCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCATGGTTTTAGACTGGGTTCTCTAGGAAATGCAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTTTCTAGCAACATGTTTTCTCATGTTGGTGGGAATGTTAGTGATTTGACATCCAGTGTTGGGCAGGGGTCTCCTAAGCAGTTGTCGCATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGAACGGATGAGAAACCTCTATCATCGTCGAAGTGAAGCAAACAATAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATATTGCGTGGGGAAGACAACAGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGAACAAATGTAATGTCGGCTATGCATTCATCAATATGACTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCCGGTGATCCGGAGCCTTTCCCCTTGGGCGCCAATGTTAGAGTAAGGCCAGGAAAGTTACGCAATTGTGGCAGCGAAGAGAATCGTATTCAAGGGACTTCTTCAACTTTGGCAAGTGCAGAGGAGTTTGCTAGTGGAATACATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2898 0.4155 MNQRGVTASSHLYDDVSYASERNDGLRKPESVHGDHPQGKGEIAASPGGILHTSSTLERNAKNGLPMSQTSLSGEISENLHFGGQAGIVDVLKDSKESLNHHPRSWSDVHRQPASSSYGLIGNKIFTNAGSRESSLFSSSLSDMFSQKLRLLGNGGLSDQNINVGFLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDALGSSAHAKPTDDFEDFDLFSSGGGMELEGDELLVSGKRISGLELDGDSAYFGGSKGKSPFGEQSSRTLFVRNITSNEEDSDIKALFEQYGDIRTIYTASKHQGFVMVSYYDLRAAQNAMKALQNRSLNSRNLDIHYSFPKGNASEKDISHGTLMISGLDPSVLKEELKHIFGFYGEIKKIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKNATRMMKPSQKAQDESDLGHNLNGILFLRQKGVSSGVIASGGSLENGYNHRFQSASQLPLNAFIDNTIFHSISNTARGASPVTVSGARESSNAVDAMKFASIPRFHPHSLPEYRDGLANGSPYNLSNTIKMAANIGSGSTEASDRRHIQGISSTGNLAEFNAGGNGSLPHHQLYHMWNGSNMRQQSPSNAMVWQKTPSFVNGAGAPGLPQIPSFPRTPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDAHGFRLGSLGNAGFHGSWQLHPPDLSSNMFSHVGGNVSDLTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANVRVRPGKLRNCGSEENRIQGTSSTLASAEEFASGIHSSPSSSRDTD 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04695 965 SUPERFAMILY RNA-binding domain, RBD 264 427 IPR035979 GO:0003676
Trre6g04695 965 Gene3D - 348 445 IPR012677 -
Trre6g04695 965 Gene3D - 259 347 IPR012677 -
Trre6g04695 965 MobiDBLite consensus disorder prediction 21 37 - -
Trre6g04695 965 SUPERFAMILY RNA-binding domain, RBD 791 876 IPR035979 GO:0003676
Trre6g04695 965 SMART rrm1_1 268 336 IPR000504 GO:0003723
Trre6g04695 965 SMART rrm1_1 353 421 IPR000504 GO:0003723
Trre6g04695 965 SMART rrm1_1 791 869 IPR000504 GO:0003723
Trre6g04695 965 CDD RRM3_MEI2_like 792 877 IPR034454 -
Trre6g04695 965 CDD RRM1_MEI2_like 266 341 IPR034453 -
Trre6g04695 965 Gene3D - 783 875 IPR012677 -
Trre6g04695 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 105 960 - -
Trre6g04695 965 MobiDBLite consensus disorder prediction 927 965 - -
Trre6g04695 965 FunFam Protein MEI2-like 1 351 445 - -
Trre6g04695 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 352 425 IPR000504 GO:0003723
Trre6g04695 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 340 IPR000504 GO:0003723
Trre6g04695 965 Pfam RNA recognition motif 2 789 885 IPR007201 -
Trre6g04695 965 MobiDBLite consensus disorder prediction 21 50 - -
Trre6g04695 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 333 IPR000504 GO:0003723
Trre6g04695 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 354 419 IPR000504 GO:0003723
Trre6g04695 965 MobiDBLite consensus disorder prediction 933 965 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04695 Trre-Chr6 49856560 49862123 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04695 262 426 Eukaryotic Initiation Factors Gene Family AT3G16380 23.118 5.81e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04695 - - gmx:100797616 1455.65