Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04694 ATGCCTTTTGAAATAATGAACCAGAGGGGTGTTACTGCTTCATCCCATCTTTATGATGATGTTTCCTATGCTTCTGAGAGAAATGATGGATTACGGAAGCCGGAATCCGTTCATGGTGATCATCCACAAGGAAAGGGTGAAATTGCAGCTTCACCTGGAGGCATTTTGCATACTTCATCAACCCTCGAAAGAAATGCAAAAAATGGCTTGCCCATGTCACAGACTAGTCTTTCTGGGGAAATTTCAGAAAACCTACACTTTGGTGGACAAGCTGGCATTGTAGATGTGCTGAAGGATTCAAAGGAATCATTGAATCATCATCCAAGATCATGGTCTGATGTGCACAGGCAGCCAGCATCTAGCTCGTATGGTTTAATTGGGAACAAGATTTTCACCAATGCAGGCTCACGTGAAAGCAGTCTATTCTCAAGCTCACTGTCCGATATGTTTAGCCAAAAGTTGAGGTTATTGGGAAACGGTGGTCTGTCTGATCAGAACATTAATGTTGGTTTTCTTCCTGAGGAAGAACCATACAAATCTCTTGAAGAAATTGAGGCTGACACTATAGGAGATCTCCTTCCTGACGAAGATGATCTGTTTTCTGGTGTCACTGATGCTTTAGGAAGCAGTGCTCATGCCAAACCAACTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGACGAACTTCTAGTTTCAGGAAAAAGAATCAGTGGCTTGGAATTGGATGGAGATTCTGCTTACTTTGGGGGTTCTAAAGGCAAAAGTCCTTTTGGTGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTACTAGCAATGAAGAAGACTCGGATATAAAGGCTCTATTTGAGCAATATGGAGATATCCGAACCATTTATACTGCCTCCAAGCATCAAGGGTTTGTTATGGTTTCATATTATGACCTAAGGGCTGCACAAAATGCAATGAAAGCACTTCAAAATAGGTCATTGAATTCTAGGAATCTGGATATACATTATTCATTTCCAAAGGGAAATGCTTCAGAGAAGGATATTAGCCACGGTACACTGATGATATCTGGTCTTGACCCATCTGTTTTGAAAGAGGAACTAAAACATATTTTTGGGTTTTATGGAGAAATCAAAAAAATCTATGAATATCCAGAAATGAATCATATCAAATATATTGAATTTTATGATGTTCGAGGTGCAGAAGCTTCTCTCCGTTCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAGCTTGAACCTGGCCATCCTAAGAATGCAACACGTATGATGAAGCCGTCTCAAAAGGCACAAGACGAATCTGATCTTGGTCATAATCTCAATGGCATCTTATTTTTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGAAGCTTGGAAAATGGATATAATCATAGATTCCAATCTGCATCACAGCTGCCTTTGAATGCTTTCATTGATAACACAATTTTTCACAGTATTTCCAACACCGCAAGAGGAGCATCTCCTGTAACAGTATCTGGTGCTCGTGAGTCCAGTAACGCTGTTGATGCAATGAAATTTGCATCTATTCCAAGATTCCATCCTCATTCTTTGCCTGAGTATCGTGATGGTTTAGCTAATGGTAGTCCTTACAATTTGTCAAATACCATTAAAATGGCTGCCAATATTGGAAGTGGATCCACAGAAGCATCTGACAGAAGGCACATTCAGGGAATTAGCTCAACTGGGAACTTAGCAGAATTTAATGCAGGAGGAAATGGGAGTCTTCCTCACCACCAGCTTTATCATATGTGGAATGGCTCAAACATGCGTCAACAATCTCCATCAAATGCTATGGTTTGGCAGAAAACACCATCTTTTGTTAATGGTGCTGGTGCTCCAGGTCTTCCACAGATACCCAGCTTTCCCAGGACACCGGCTCATGTGCTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGGATCACCCTGGGAAAGACAACATTCTTACTTGGGAGAGTCTCCTGATGCTCATGGTTTTAGACTGGGTTCTCTAGGAAATGCAGGTTTTCATGGTAGCTGGCAGTTGCATCCTCCAGATCTTTCTAGCAACATGTTTTCTCATGTTGGTGGGAATGTTAGTGATTTGACATCCAGTGTTGGGCAGGGGTCTCCTAAGCAGTTGTCGCATGTCTTCCCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGAACGGATGAGAAACCTCTATCATCGTCGAAGTGAAGCAAACAATAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATATTGCGTGGGGAAGACAACAGAACAACACTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTACAGCCATAGATGAGAGTTGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTCTTTGAACAAATGTAATGTCGGCTATGCATTCATCAATATGACTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTCATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCCGTACTTGCATATGCCCGAATTCAAGGAAAATCTGCTCTTATTGCTCATTTCCAGAATTCAAGTCTGATGAACGAAGATAAACGTTGCCGCCCTATTCTATTCCATACAGATGGTCCAAATGCCGGTGATCCGGAGCCTTTCCCCTTGGGCGCCAATGTTAGAGTAAGGCCAGGAAAGTTACGCAATTGTGGCAGCGAAGAGAATCGTATTCAAGGGACTTCTTCAACTTTGGCAAGTGCAGAGGAGTTTGCTAGTGGAATACATTCTTCACCAAGTTCTTCAAGAGACACTGACTGA 2928 0.4143 MPFEIMNQRGVTASSHLYDDVSYASERNDGLRKPESVHGDHPQGKGEIAASPGGILHTSSTLERNAKNGLPMSQTSLSGEISENLHFGGQAGIVDVLKDSKESLNHHPRSWSDVHRQPASSSYGLIGNKIFTNAGSRESSLFSSSLSDMFSQKLRLLGNGGLSDQNINVGFLPEEEPYKSLEEIEADTIGDLLPDEDDLFSGVTDALGSSAHAKPTDDFEDFDLFSSGGGMELEGDELLVSGKRISGLELDGDSAYFGGSKGKSPFGEQSSRTLFVRNITSNEEDSDIKALFEQYGDIRTIYTASKHQGFVMVSYYDLRAAQNAMKALQNRSLNSRNLDIHYSFPKGNASEKDISHGTLMISGLDPSVLKEELKHIFGFYGEIKKIYEYPEMNHIKYIEFYDVRGAEASLRSLNGICIAGKHIKLEPGHPKNATRMMKPSQKAQDESDLGHNLNGILFLRQKGVSSGVIASGGSLENGYNHRFQSASQLPLNAFIDNTIFHSISNTARGASPVTVSGARESSNAVDAMKFASIPRFHPHSLPEYRDGLANGSPYNLSNTIKMAANIGSGSTEASDRRHIQGISSTGNLAEFNAGGNGSLPHHQLYHMWNGSNMRQQSPSNAMVWQKTPSFVNGAGAPGLPQIPSFPRTPAHVLRASHIDHHVGSAPVVTGSPWERQHSYLGESPDAHGFRLGSLGNAGFHGSWQLHPPDLSSNMFSHVGGNVSDLTSSVGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLTAIDESCRGTYDFLYLPIDFKASISLNKCNVGYAFINMTDPGQIIPFHQAFHGKKWEKFNSEKVAVLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGANVRVRPGKLRNCGSEENRIQGTSSTLASAEEFASGIHSSPSSSRDTD 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04694 975 PANTHER RNA RECOGNITION MOTIF-CONTAINING 110 970 - -
Trre6g04694 975 SMART rrm1_1 273 341 IPR000504 GO:0003723
Trre6g04694 975 SMART rrm1_1 796 879 IPR000504 GO:0003723
Trre6g04694 975 SMART rrm1_1 358 426 IPR000504 GO:0003723
Trre6g04694 975 MobiDBLite consensus disorder prediction 937 975 - -
Trre6g04694 975 MobiDBLite consensus disorder prediction 26 55 - -
Trre6g04694 975 Gene3D - 788 885 IPR012677 -
Trre6g04694 975 Coils Coil 973 975 - -
Trre6g04694 975 FunFam Protein MEI2-like 1 356 450 - -
Trre6g04694 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 272 345 IPR000504 GO:0003723
Trre6g04694 975 SUPERFAMILY RNA-binding domain, RBD 796 886 IPR035979 GO:0003676
Trre6g04694 975 MobiDBLite consensus disorder prediction 26 42 - -
Trre6g04694 975 MobiDBLite consensus disorder prediction 943 975 - -
Trre6g04694 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 274 338 IPR000504 GO:0003723
Trre6g04694 975 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 424 IPR000504 GO:0003723
Trre6g04694 975 Gene3D - 264 352 IPR012677 -
Trre6g04694 975 SUPERFAMILY RNA-binding domain, RBD 269 432 IPR035979 GO:0003676
Trre6g04694 975 CDD RRM3_MEI2_like 797 887 IPR034454 -
Trre6g04694 975 CDD RRM1_MEI2_like 271 346 IPR034453 -
Trre6g04694 975 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 430 IPR000504 GO:0003723
Trre6g04694 975 Gene3D - 353 450 IPR012677 -
Trre6g04694 975 Pfam RNA recognition motif 2 794 895 IPR007201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04694 Trre-Chr6 49856560 49862138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04694 267 431 Eukaryotic Initiation Factors Gene Family AT3G16380 23.118 5.00e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04694 - - gmx:100797616 1456.81