Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04687 ATGGATAAGAGGAGAGAATCATGGGAAGAAGAGGGAAAAGAAGATGAGAATTTGTTTCCAGTTTTTTCTGAAAGATCTCAGCAAGATATGTCAGCAATAGTATCAGCACTTACACAAGTTATGGGTGGTAACAACAATACTGAAATGCATGAAGCTTCTTCAATTCATAATATTACTCAACAATCTCAACTACCACAACAAGATCAAGGGAGTGTAAGAAAAAGACACTATAGAGGTGTGAGGCAGAGGCCATGGGGAAAATGGGCAGCAGAGATTCGCGATCCGAAGAAAGCAGCAAGGGTATGGCTAGGAACCTTTGAAACTGCTGAGGCTGCAGCTATTGCCTATGATGAAGCTGCACTCAGATTCAAAGGAAGCAAAGCTAAGCTCAATTTTCCTGAAAGAGTTCAAAGTTCAGCAGAATTTGGATATAACCAAGAATTTCATCACCTAGTTTCAAACACAAGTAACATGCAACAATCTAACCAACAAGTTCCTCTTCCAAACTTTTCTCAAGAAACATATTCAAATCCTTATCAATATGCTGCACAAACACAACTTCAAGCTAGTGGCAGCAGTAGTAACTTCAATCAGGATATGCTTCGTTTCTATGGGAGAGATATGTTTGTTTCTAATTCTCAGGCTTTAATATCAACTGCATCTTCATCTTCATCATCGTCTTCTGGATTATCTCAGCAACAACAAGAGTTTTTGAGATTGTCAATGCAATTCGGAGGTTCTTCTTCCTCTTCTTCCGCTTGTGAGCCTCCGAGAAATTGGGGGGATGGAATGGATGGGAAACAATGA 807 0.3978 MDKRRESWEEEGKEDENLFPVFSERSQQDMSAIVSALTQVMGGNNNTEMHEASSIHNITQQSQLPQQDQGSVRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAAIAYDEAALRFKGSKAKLNFPERVQSSAEFGYNQEFHHLVSNTSNMQQSNQQVPLPNFSQETYSNPYQYAAQTQLQASGSSSNFNQDMLRFYGRDMFVSNSQALISTASSSSSSSSGLSQQQQEFLRLSMQFGGSSSSSSACEPPRNWGDGMDGKQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04687 268 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Trre6g04687 268 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Trre6g04687 268 PANTHER DNA-BINDING DOMAIN 46 218 IPR044808 GO:0003700|GO:0009873
Trre6g04687 268 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Trre6g04687 268 MobiDBLite consensus disorder prediction 241 268 - -
Trre6g04687 268 CDD AP2 76 134 IPR001471 GO:0003700|GO:0006355
Trre6g04687 268 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Trre6g04687 268 MobiDBLite consensus disorder prediction 241 256 - -
Trre6g04687 268 FunFam Ethylene-responsive transcription factor 2 75 134 - -
Trre6g04687 268 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Trre6g04687 268 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Trre6g04687 268 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04687 Trre-Chr6 49829836 49831453 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04687 17 172 AP2-EREBP Transcription Factor Family AT5G61890 58.434 1.18e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g04687 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04687 - - gmx:100787091 248.054