Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04685 ATGGATCCTGACGCATTCACTGCTAGTTTGTTCAAGTGGGACCCACGTAACGTTCTTTCAACTGCACCATCTCCTCGTCCTCAACTTCTTGACTACACCGTCAGTCCTTCAGCTCCTCCGATGACTTATCATCCAGCAAGGTTACCAAGGGAGCTTGGTGGTTTGGAAGAACTGTTTCAAGCTTATGGTATAAGATACTACACGGCGGCGAAGATAGCTGAGCTTGGTTTCACGGTGAGTACTCTGGTGGACATGAAAGATGATGAGCTTGATGACATGATGAACAGTTTATCTCAGATTTTTCGTTGGGATCTTCTTGTTGGTGAAAGATATGGAATCAAAGCTGCCATTAGAGCTGAAAGAAGAAGACTTGATGAAGAGGAAATGAAACGCCGTGGTCTTATGTCTGTTGATACCACCAATGCTCTTGATGCTCTCTCTCAAGAAGGTTTGTCGGAGGAGCCGGTGGTGCAACGAGAAAAGGAGGCGGTAGGGAGTGGAGGAGGGAGTACATGGGAGGTAGCTGTGGTGGAGGAAAGGCGAAAGAGGCAGCAGATAAGAAGGCGAAGGATGAAGATGAAGGGAAATCTTGATCATGGTGAGAATGAAGACGGAGAAGAAGAGGATGAAGATAACAACAGTGGTGGTGGTGGTGGTGGTGGTGAGAGACAAAGAGAACATCCATTCATTGTAACAGAGCCAGGGGAAGTTGCACGTGGCAAAAAGAACGGTCTAGATTATCTGTTTCATCTCTATGAACAATGTCGTGAGTTTTTGATTCAAGTTCAAGCCATAGCCAAAGAACGCGGTGAGAAATGTCCTACAAAGGTAACAAATCAGGTATTTAGGTACGCGAAGAAAGCTGGAGCAAGTTACATAAACAAGCCGAAAATGAGACACTACGTGCATTGCTATGCATTGCATTGTTTAGATGAGGAAGTTTCCAATGAGCTGAGAAGGGGTTTCAAGGAAAGAGGGGAGAACGTCGGCGCGTGGAGGCAAGCTTGTTACAAGCCACTAGTAGCGATCGCTGCACGTCAAGGATGGGATATTGATGCAATATTCAACGCGCATCCGCGTCTTTCTATATGGTACGTGCCAACCAAACTCCGTCAGCTTTGTCACGCCGAGAGAAACAGTGCTGCTGCTTCGAGCTCCGTCTCTGTTGGAACAACCCACCTTCCTTTCTAA 1191 0.4677 MDPDAFTASLFKWDPRNVLSTAPSPRPQLLDYTVSPSAPPMTYHPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEEMKRRGLMSVDTTNALDALSQEGLSEEPVVQREKEAVGSGGGSTWEVAVVEERRKRQQIRRRRMKMKGNLDHGENEDGEEEDEDNNSGGGGGGGERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGTTHLPF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04685 396 Gene3D Protein LEAFY 219 388 IPR038276 -
Trre6g04685 396 MobiDBLite consensus disorder prediction 147 169 - -
Trre6g04685 396 Pfam Floricaula / Leafy protein SAM domain 51 128 IPR035079 -
Trre6g04685 396 MobiDBLite consensus disorder prediction 185 236 - -
Trre6g04685 396 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 216 382 IPR035209 GO:0003677
Trre6g04685 396 PANTHER PROTEIN LEAFY 1 395 IPR002910 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04685 Trre-Chr6 49786442 49789093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04685 1 390 Orphan Transcription Factor Family AT5G61850 64.706 3.26e-161 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Trre6g04685 C_LFY_FLO 1.6e-110 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04685 - - gmx:100798196 625.55