Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04654 ATGATTATACAACGATACCATCTTACCGAACGTGATGATTACAAAAAATATGCAAGTATATGCCGGATGGTTCAGAAGGTAGTAAGCATAGTGAAACAGATGGACCCCAAAGATCCTTTTCGAGTTGATATGACTGATAAGCTTTTGGAAAAACTTTACAATATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACGCTTAACTGTGTCATCCATCTGCAGACGGAGGCTTGCAACTGTTTTGGTGAAAATGAAATTTGCTGAGCATTTGAAAGAAGCTGTAACGTATATTGAGCAGGGGCATGTTCGAGTTGGTCCAGATACAATTACAGATCCAGCTTACCTTGTTACTAGAAACATGGAAGACTTCATTACGTGGGTGGATTCATCCAAGATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTATTGAATTAG 462 0.3918 MIIQRYHLTERDDYKKYASICRMVQKVVSIVKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITQCERLTVSSICRRRLATVLVKMKFAEHLKEAVTYIEQGHVRVGPDTITDPAYLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLLN 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04654 153 Gene3D - 78 153 IPR036986 GO:0003723
Trre6g04654 153 CDD S4 78 146 - -
Trre6g04654 153 Pfam Ribosomal protein S4/S9 N-terminal domain 10 76 IPR001912 GO:0019843
Trre6g04654 153 Pfam S4 domain 78 124 IPR002942 GO:0003723
Trre6g04654 153 SMART s4_6 78 141 IPR002942 GO:0003723
Trre6g04654 153 PANTHER 30S 40S RIBOSOMAL PROTEIN 2 149 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre6g04654 153 SMART Ribosomal_S4_2 1 77 IPR001912 GO:0019843
Trre6g04654 153 ProSiteProfiles S4 RNA-binding domain profile. 78 144 - -
Trre6g04654 153 FunFam U3 small nucleolar ribonucleoprotein IMP3 78 150 - -
Trre6g04654 153 SUPERFAMILY Alpha-L RNA-binding motif 2 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04654 Trre-Chr6 49526699 49528884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04654 34 119 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 29.885 8.95e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04654 K14560 - gmx:100798516 253.062