Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04653 ATGAGGAAGCTAAAACATCATGAGGCGAAGCTATTGAAGAAGGTGAATTTTTTGGAATGGAAGAGAGAAGGGAGTCACAGAGAGAACATGATTATACAACGATACCATCTTACCGAACGTGATGATTACAAAAAATATGCAAGTATATGCCGGATGGTTCAGAAGGTAGTAAGCATAGTGAAACAGATGGACCCCAAAGATCCTTTTCGAGTTGATATGACTGATAAGCTTTTGGAAAAACTTTACAATATGGGTGTGATTCCAACCAGGCAAAGCATCACACAATGTGAACGCTTAACTGTGTCATCCATCTGCAGACGGAGGCTTGCAACTGTTTTGGTGAAAATGAAATTTGCTGAGCATTTGAAAGAAGCTGTAACGTATATTGAGCAGGGGCATGTTCGAGTTGGTCCAGATACAATTACAGATCCAGCTTACCTTGTTACTAGAAACATGGAAGACTTCATTACGTGGGTGGATTCATCCAAGATAAAGAGAAAGGTGCTTCAGTACAATGACAAGTTGGATGACTATGATTTATTGAATTAG 549 0.3953 MRKLKHHEAKLLKKVNFLEWKREGSHRENMIIQRYHLTERDDYKKYASICRMVQKVVSIVKQMDPKDPFRVDMTDKLLEKLYNMGVIPTRQSITQCERLTVSSICRRRLATVLVKMKFAEHLKEAVTYIEQGHVRVGPDTITDPAYLVTRNMEDFITWVDSSKIKRKVLQYNDKLDDYDLLN 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04653 182 CDD S4 107 168 - -
Trre6g04653 182 Gene3D - 107 181 IPR036986 GO:0003723
Trre6g04653 182 ProSiteProfiles S4 RNA-binding domain profile. 107 173 - -
Trre6g04653 182 SMART s4_6 107 170 IPR002942 GO:0003723
Trre6g04653 182 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 178 IPR022801 GO:0003735|GO:0015935|GO:0019843
Trre6g04653 182 FunFam U3 small nucleolar ribonucleoprotein IMP3 107 179 - -
Trre6g04653 182 Pfam Ribosomal protein S4/S9 N-terminal domain 3 105 IPR001912 GO:0019843
Trre6g04653 182 SMART Ribosomal_S4_2 3 106 IPR001912 GO:0019843
Trre6g04653 182 Pfam S4 domain 107 153 IPR002942 GO:0003723
Trre6g04653 182 SUPERFAMILY Alpha-L RNA-binding motif 25 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04653 Trre-Chr6 49526699 49528971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04653 63 148 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 29.885 1.71e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04653 K14560 - gmx:100782389 300.056