Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04630 ATGTCCAATTCCAACAACCCAACACCACCAAAACCCACATGGGTTCTCCCTTATGTAACAGAGAATCTCTTTGAAGTCTACACCTTAGGTAGAAAACTGGGTCAAGGTCAATTCGGCATCACATATCACTGTACACACAACTCAACAGGTAGAACCTATGCTTGTAAATCAATCCCAAAAAAGAAACTTTTATGCAAAGAAGATTATGATGATGTTTGGAGAGAGATTCAGATAATGCATCATTTATCTGAACACCCAAATGTTGTGAGGATTCATGGTACTTATGAAGATTCATTTTCTGTTCATTTGGTTATGGAACTTTGTGAAGGTGGTGAATTGTTTGATAGGATTGTGAAGAAAGGTCATTATAGTGAAAGACAAGCTGCTAAATTGATTAGGACAATTGTTGAGGTTGTTGAAGCTTGTCATTCTCTTGGTGTTATGCATAGAGACCTTAAACCTGAGAATTTTTTGTTTGATACTTTTGATGAAGATGCTGTTCTTAAAACTATTGATTTTGGGTTGTCTGTTTTTCATAAACCAGGTGAAATCTTTAGTGATGTTGTTGGAAGTCCATACTATGTTGCACCAGAAGTCTTGCACAAACATTATGGACCTGAAGCAGACGTGTGGAGTGCTGGCGTTATTTTGTATATCTTATTAAGCGGGGTGCCACCATTTTGGGCCGAGACAGATCAGGGGATCTTCAGACAGATTTTGCAGGGACGGCTTGATTTCAAGTCTGAGCCATGGCCTGGGATTTCAGACAGCGCCAAGGATCTAATTCGAAAAATGCTCGACAGAAATCCAAAAACTAGGTTTACAGCTCATCAAGTACTATGTCACCCATGGATTGTTGATGATAACATTGCACCAGATAGACCTCTTGATTCTGCTGTTTTATCTCGCTTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTGCGTGTTATTGCGGAGAGGCTTTCCGAGGAAGAAATTGGTGGTCTGAAGGAGTTATTCAGGATGCTTGATGCTGACAACAGTGGAACTATAACATTGGATGAGCTCAAAGAAGGCTTAAAGCGAGTAGGATCCGAACTTATGGAATCTGAAATCAAGGATCTTATGGATGCAGCAGATATTGATAATAACGGTACACTCGACTATGGTGAATTCATTGCTGCTACTGTCCACTTAAATAAGCTGGAGAGAGAGGAAAATCTGTTGTCAGCATTCTCTTACTTTGACAAAGATGGAAGTGGCTACATCACCGTTGACGAGATACAAGCAGCTTGTAAGGAGTTTGGTTTGGATGATATCCATATTGATGAAATGGTTAAGGAAATTGATCAAGATAATGATGGACAAATAGATTATGGGGAATTTGCTGCCATGATGAGAAAGGGCAATGGAGGGATCGGAAGGCGAACCATGACAAGCACACTCAATTTCAGAGATGCTCTAGGAATCATAGGCAATGGTTCCAATTAA 1482 0.3981 MSNSNNPTPPKPTWVLPYVTENLFEVYTLGRKLGQGQFGITYHCTHNSTGRTYACKSIPKKKLLCKEDYDDVWREIQIMHHLSEHPNVVRIHGTYEDSFSVHLVMELCEGGELFDRIVKKGHYSERQAAKLIRTIVEVVEACHSLGVMHRDLKPENFLFDTFDEDAVLKTIDFGLSVFHKPGEIFSDVVGSPYYVAPEVLHKHYGPEADVWSAGVILYILLSGVPPFWAETDQGIFRQILQGRLDFKSEPWPGISDSAKDLIRKMLDRNPKTRFTAHQVLCHPWIVDDNIAPDRPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFRMLDADNSGTITLDELKEGLKRVGSELMESEIKDLMDAADIDNNGTLDYGEFIAATVHLNKLEREENLLSAFSYFDKDGSGYITVDEIQAACKEFGLDDIHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMTSTLNFRDALGIIGNGSN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04630 493 FunFam Calcium-dependent protein kinase SK5 398 493 - -
Trre6g04630 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Trre6g04630 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 24 459 - -
Trre6g04630 493 ProSiteProfiles EF-hand calcium-binding domain profile. 328 363 IPR002048 GO:0005509
Trre6g04630 493 FunFam calcium-dependent protein kinase SK5 322 394 - -
Trre6g04630 493 ProSitePatterns Protein kinases ATP-binding region signature. 33 61 IPR017441 GO:0005524
Trre6g04630 493 FunFam Calcium-dependent protein kinase SK5 195 290 - -
Trre6g04630 493 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Trre6g04630 493 CDD STKc_CAMK 26 284 - -
Trre6g04630 493 Gene3D - 398 492 - -
Trre6g04630 493 Gene3D Phosphorylase Kinase; domain 1 29 113 - -
Trre6g04630 493 FunFam Calcium-dependent protein kinase 1 29 112 - -
Trre6g04630 493 Pfam EF-hand domain pair 403 464 IPR002048 GO:0005509
Trre6g04630 493 Pfam EF-hand domain pair 333 393 IPR002048 GO:0005509
Trre6g04630 493 CDD EFh 333 392 IPR002048 GO:0005509
Trre6g04630 493 Gene3D Transferase(Phosphotransferase) domain 1 114 325 - -
Trre6g04630 493 ProSiteProfiles EF-hand calcium-binding domain profile. 364 399 IPR002048 GO:0005509
Trre6g04630 493 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04630 493 FunFam CDPK-related kinase 3 19 187 - -
Trre6g04630 493 Gene3D - 326 397 - -
Trre6g04630 493 SUPERFAMILY Protein kinase-like (PK-like) 7 308 IPR011009 -
Trre6g04630 493 SMART efh_1 332 360 IPR002048 GO:0005509
Trre6g04630 493 SMART efh_1 438 466 IPR002048 GO:0005509
Trre6g04630 493 SMART efh_1 404 432 IPR002048 GO:0005509
Trre6g04630 493 SMART efh_1 368 396 IPR002048 GO:0005509
Trre6g04630 493 SUPERFAMILY EF-hand 324 464 IPR011992 -
Trre6g04630 493 ProSitePatterns EF-hand calcium-binding domain. 341 353 IPR018247 -
Trre6g04630 493 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Trre6g04630 493 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Trre6g04630 493 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04630 493 ProSitePatterns EF-hand calcium-binding domain. 377 389 IPR018247 -
Trre6g04630 493 ProSiteProfiles EF-hand calcium-binding domain profile. 438 469 IPR002048 GO:0005509
Trre6g04630 493 Pfam Protein kinase domain 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04630 Trre-Chr6 49348420 49351750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04630 1 493 EF-hand Containing Proteins AT1G35670 75.202 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre6g04630 Pkinase 4.4e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04630 K13412 - gmx:100790443 907.131