Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04616 ATGAACAAGGCACGCTTTGAGTTTTTCTTCATTTTGCTTATTCTCCTTGCTTCTCAGATGATGGTACAAACTGAAGGAAGGAGGTATCAGAGGGCAAGAGGACATAGAAGTAGAGGATTTTGTATGAACCATCACCACTGCACTCATGCTTGTCAATCTGAAGGCTTTGAATGTGGTGAATGTGGGAGTTTTCGAAGAGATCGTAGAAGAAGCTATGGAACGAAAACACACAGAAGTTTTGGAACGAAAACACACAGAAGTTTTGGAACGAAAACTCCACCGTCTCTGCCGCCGTTAAAACACAACTTGCTCTCTTCCGCCGACGAATCATCTCCGCTTCTCTCTTTCTCCTCCACCGAAGAATCTTTCCGGCGCTTCTCAGGTGCAACACTTTTTACACATGCACCACCAAGGAAGACAAGAAGACGCTTAGCTCGTCAGAAGACGGCATTTAAGATTCTCCCCAGGCCTACTGCTGGACCTCTTAGGCCAATTGTTCATATGGAGAGACTCAGAAATACAACATGA 528 0.4508 MNKARFEFFFILLILLASQMMVQTEGRRYQRARGHRSRGFCMNHHHCTHACQSEGFECGECGSFRRDRRRSYGTKTHRSFGTKTHRSFGTKTPPSLPPLKHNLLSSADESSPLLSFSSTEESFRRFSGATLFTHAPPRKTRRRLARQKTAFKILPRPTAGPLRPIVHMERLRNTT 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04616 175 MobiDBLite consensus disorder prediction 72 96 - -
Trre6g04616 175 Pfam Ribosomal protein L13e 134 172 IPR001380 GO:0003735|GO:0005840|GO:0006412
Trre6g04616 175 Gene3D - 31 75 IPR036574 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04616 Trre-Chr6 49180672 49190014 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04616 132 172 Cytoplasmic Ribosomal Protein Gene Family AT5G23900 63.415 1.97e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04616 K02873 - gmx:100788332 75.485