Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04600 ATGAACAAGACACGCTTTGGGTTTTTCTTCATTTTGCTCGTTCTTCTTGCTTCTCAGATGGTGGTACAAACTGAGGGAAGGCACTGTGAATCGAAGAGCCATAGATTTAAAGGGATGTGTTTGAGTGATCACAATTGTGCTTCAGTTTGTCATGTTGAAGGTTTTCCAGGTGGATTCTCGCAAGAGGTACCAGAAGAAGACTTTAAGAGTTTATTGGAGTATTGGAGAGATGAAAAAACTCAAGAAGTAAGTCATCAAAATGCCCAAAATATAGCTCAACTGAAATTTAGACATCGAACGGGGAATAAAAGCTTTGCTGTTATCAGAGAAAACATGCGTTAA 342 0.3889 MNKTRFGFFFILLVLLASQMVVQTEGRHCESKSHRFKGMCLSDHNCASVCHVEGFPGGFSQEVPEEDFKSLLEYWRDEKTQEVSHQNAQNIAQLKFRHRTGNKSFAVIRENMR 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04600 113 Gene3D - 27 67 IPR036574 -
Trre6g04600 113 PRINTS Purothionin signature 28 43 IPR008176 GO:0006952
Trre6g04600 113 PRINTS Purothionin signature 44 57 IPR008176 GO:0006952
Trre6g04600 113 SUPERFAMILY Scorpion toxin-like 27 60 IPR036574 -
Trre6g04600 113 Pfam Plant transposase (Ptta/En/Spm family) 66 112 IPR004252 -
Trre6g04600 113 Pfam Gamma-thionin family 27 58 - -
Trre6g04600 113 ProSitePatterns Gamma-thionins family signature. 27 50 IPR008176 GO:0006952
Trre6g04600 113 PANTHER DEFENSIN-LIKE PROTEIN 1 2 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04600 Trre-Chr6 49093527 49102765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04600 1 58 Plant Defensins Gene Families AT5G63660 58.621 9.76e-18 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04600 - - gmx:100788332 113.235