Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04568 ATGGCAGATGTCAACCGCTCTAACACCAACAAACCTGAGTGGCTTCAACAGTACGATCTCATCGGAAAGATCGGTGAAGGAACCTACGGTCTCGTTTTCCTTGCCAAGATCAAATCCAACCGCGGCAAATCCATCGCCATCAAGAAATTCAAACAATCTAAAGATGGCGACGGTGTCTCCCCCACCGCTATCCGTGAAATCATGTTGCTGAGGGAGATAACTCATGAAAATGTTGTGAAGCTTGTGAATGTTCATATCAATCATGCGGACATGTCTCTGTATCTGGCTTTTGATTATGCTGAACATGATCTTTATGAAATAATAAGGCATCATAGAGACAAGGTCAACCAATCAATTAATCAGTACACTGTTAAGTCGATACTGTGGCAGTTGCTCAATGGGCTGAACTATCTGCACAGCAATTGGATAATACATCGAGATTTGAAGCCATCGAATATATTGGTTATGGGTGATGGGGAGGAACATGGGGTTGTTAAAGTTGCTGACTTTGGGCTTGCAAGGATATACCAAGCCCCTCTGAAGCCATTATCTGAAAATGGGGTTGTTGTAACCATTTGGTATCGTGCTCCTGAGTTGCTTCTTGGAGCAAAACATTATACCAGTGCTGTTGATATGTGGGCTATGGGATGTATTTTTGCTGAGTTGTTGACCTTGAAGCCACTATTTCAAGGTGCAGAAGTCAAAGCTACACCCAATCCTTTTCAGCTTGATCAGCTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTTCCTTAGCACATCTTCCCCATTGGCAACAAGATTCGCAACACATACAAGGACACAAATATGACAACGCCAATCTCTATAGTGTTGTACACCTATCTCCAAAAAGTCCTGCATATGACCTATTGTCAAAGATGCTTGAATATGATCCTCGAAGGCGTATAACAGCAGCACAGGCTATGGAGCATGAGTAA 975 0.4287 MADVNRSNTNKPEWLQQYDLIGKIGEGTYGLVFLAKIKSNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHRDKVNQSINQYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKVADFGLARIYQAPLKPLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAMGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPSLAHLPHWQQDSQHIQGHKYDNANLYSVVHLSPKSPAYDLLSKMLEYDPRRRITAAQAMEHE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04568 324 SMART serkin_6 18 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04568 324 Pfam Protein kinase domain 18 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04568 324 ProSiteProfiles Protein kinase domain profile. 18 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04568 324 ProSitePatterns Protein kinases ATP-binding region signature. 24 49 IPR017441 GO:0005524
Trre6g04568 324 Gene3D Transferase(Phosphotransferase) domain 1 98 324 - -
Trre6g04568 324 PANTHER CELL DIVISION PROTEIN KINASE 16 324 - -
Trre6g04568 324 SUPERFAMILY Protein kinase-like (PK-like) 13 324 IPR011009 -
Trre6g04568 324 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Trre6g04568 324 FunFam Cyclin-dependent kinase e-1 6 99 - -
Trre6g04568 324 CDD STKc_CDK8_like 17 323 - -
Trre6g04568 324 FunFam Putative cyclin-dependent kinase E-1 100 324 - -
Trre6g04568 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04568 Trre-Chr6 48802581 48811658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04568 11 324 Core Cell Cycle Gene Families AT5G63610 84.713 0.0 568
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Trre6g04568 Pkinase 2.9e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04568 K02208 - gmx:100813433 623.239