Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04563 ATGCAGGGTGAATTAGAATTGCCACCTGGTTTCAGATTTCATCCAACTGATGAAGAATTGGTGAATCATTACTTATGTAGGAAATGTGCTGGTCAATCAATTTCTGTTCCTGTTGTCAAAGAAGTTGATTTGTATAAGTTTGATCCATGGCAGCTACCTGAATTGGGATACCAAAGTGAGAAAGAATGGTACTTTTTCTCTCCAAGGGATCGGAAATACCCGAACGGTTCGCGGCCTAATCGGGCTGCTGGAAGTGGTTATTGGAAAGCTACCGGAGCTGATAAACCGATCGGGAAATTGAAACCGATGGGGATTAAAAAGGCACTGGTTTTCTATGCCGGTAAAGCGCCTAAAGGAGTGAAAACTAATTGGATTATGCATGAATATCGTCTTGCAAATGTTGATCGATCGGCCAGCAAGAAAAACAACTTAAGGCTTGATGATTGGGTGTTATGTAGAATCTACAACAAGAAAGGGAAGATTGAGAAATTCAACAATAACAACACACCAAAGGTTCAAAATTACTATGAGCATGAAGAAGAACAAGAACATGAAATGAAGCCAGAAATTAAGAAATTGGGGAACTACCAATTGTACATGGACACATCAGATTCAGTTCCAAAGCTGAACACAGATTCAAGCAGTTCAGGAGGACACGTGGTTTCACCAGACATCACATGTGACAGAGAGGTTCAGAGTGAGCCAAAATGGAATGAATTTGGAATACAGCTGGATGACGCGTTTGATTTTCAGTTCAATTACTTGGAAAATGCACTTTCTTTTGATTATGATGATGACCCTTTTGGGACCAATGATCAGTACCAAATCAACCAGCTTTCACCATTACAAGACATGTTCATGTTCCAACAAAAACCATTTTGA 882 0.3991 MQGELELPPGFRFHPTDEELVNHYLCRKCAGQSISVPVVKEVDLYKFDPWQLPELGYQSEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGKLKPMGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNLRLDDWVLCRIYNKKGKIEKFNNNNTPKVQNYYEHEEEQEHEMKPEIKKLGNYQLYMDTSDSVPKLNTDSSSSGGHVVSPDITCDREVQSEPKWNEFGIQLDDAFDFQFNYLENALSFDYDDDPFGTNDQYQINQLSPLQDMFMFQQKPF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04563 293 FunFam NAC transcription factor 16 161 - -
Trre6g04563 293 Gene3D NAC domain 16 162 IPR036093 GO:0003677|GO:0006355
Trre6g04563 293 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Trre6g04563 293 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Trre6g04563 293 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Trre6g04563 293 PANTHER NAC TRANSCRIPTION FACTOR 56 7 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04563 Trre-Chr6 48767679 48768759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04563 1 293 NAC Transcription Factor Family AT1G01720 62.458 8.71e-124 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04563 NAM 3.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04563 - - gmx:100779770 465.307