Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04536 ATGAAGTTAATCGGCGACGGAGGCGGTGGCCGGAAAGTTCTAGTCGGAGTTAAATTAGATCCCCGGAGCCGTGAATTGCTCACGTGGGCACTCGTTAAGGTTGCCGAACCCGGCGACCTCGTTATCGCGCTTCACGTTCTCGATACAGTCATTGAAGGAACATCGTCGTTGCTATCTCTGGTGAAGACTTTTGATTCAGTTCTCGCCGTATACGAAGGCTTCTGCAATTTAAAGCAGGTTGATCTTAGGTTGAAAGTGTGTAGAGGTGATTCGGTTAGGAAGCTTCTAGTACAAGAGGCGAAAGCTTTTGGAGTTTCAACGGTGATTCTAGGAACTTCCAAATCTCATCATACAATCCGTTCATCGGCGTGGGTTGCTAAGTATTGTGCGAAGAAATTGCATAAATGTGTTTCTGTTTTCGCTGTTGATAATGGCAAAATTGCTTTCCAAAGAGAAGCTAGTGGTCAAGAAAAATTACATGAAGGACCACATTTATCATCAAAATCGTTAGTGATTTTTACGAATAAAAGTGTGAAGAATTGCGGAAGTTGTGCTCTGCGAGAGATTTCTGAAACTGAAGTTGATCAAGGGGAGTTGCTTGATGGTTGTGAAACGGAAAACTCACTTGCTTTGGTACCGTTTCAAAAACTTGATGATGATTCTGTGGTGGGTAATTCGAAACAGTCAAAACCTGGTTGGTCGCTTATTCGCCATGTATTTCAGCACAAAAAGCATACCCCCAAGTCTTCGCCGAAAAGTACATTTGTTTTTCAACGGGCATTACGACATTCCAGTACTAGTAGTCATTCGTCTGCTGTAGTCCATCCAGATCATAAACAAATTAATATTGATCAAATTGATGATTCTAACCTGGATGGGGTGAGTGGTGCCATTGTGCCATTTGGATCTACTATTACCTTACCTCCTCCCACCCTTTGCAGCGACTCCGGTAACCTTCCCGAAGAATTGTTGGTCTTACGTGAGAAGTATTCGTCTTCTTGTAGATTATATAGTTTGCAGGAACTTGTTGCTGCAACTGTAAACTTCTCATCCAAAAATTTGGTTGGCAAAGGTGGTAGTAGTGATGTTTACAGAGGATGTCTTCCTGATGGCAAGGAATTGGCTGTGAAAATTTTGAAACAGTCAGAAAATGTCCTAAAAGAGTTTACTCAGGAAGTTGAGATTGTTACAACTTTGCATCACAAGAACATAATATCTCTATCTGGTTTTTGTTTAGAGGGAAACCATTTATTACTGGTTTATGATTTTTTATCAAGGGGAAGCCTAGAAGAAAACCTTCACGGTGATAAAAAGGACTATAATTCATTTGGATGGCAAGAGAGGTACCGGGTGGCCGTGGGTGTAGCTGAGGCCTTGGATTATCTGCATAACGGCTGTGCACGAGCTGTAATCCATAGAGATGTCAAATCTTCTAATATCCTTCTTTCAGACGATTTTGAGGCTCAGCTCTCAGATTTTGGACTGGCTAGTTGGGATTCTTCTTCCCATATTATTTGTACCGATGTGGCTGGTACTTTTGGGTACCTAGCTCCCGAATATTTTATGCACGGTAGAGTAACCGACAAAATTGATGTTTATGCTTTTGGTGTTGTACTCCTTGAGCTTCTATCCAATAGGAAGCCCATTAACAATGAATGTCCAAAGGGCCAGGAGAGCCTTGTTATGTGGGCAACATCAATCTTGAAAAGTGGGAAGATTTCCCAGTTGCTTGACCCAAGCCTTGGCAGTGAATACAACGATTGCCAGATCAAGAGAATGGTTTTAGCTGCTACTCTCTGTATTAGACGAGTTCCTAGACTGCGACCTCAAATCAGCCTTATACTGAAACTTCTTAATGGTGATGAAGAAGTAACACGATGGGCAGAACAAGAAGTTTGTGCACCAGAGACACATGAAGGATTTGATGAAGAACCCGTTCCAACAAATATCCAGTCCCATCTTAACCTTGCGTTGCTGGACTTGGAGGATGATGCAGTTTCTATCAGTAGCAGTGAGCAGACTGTTTCATTGGAGGACTATTTGCAAGGAAGATGGAGTCGCTCTTCTAGTTTTGACTAA 2079 0.4228 MKLIGDGGGGRKVLVGVKLDPRSRELLTWALVKVAEPGDLVIALHVLDTVIEGTSSLLSLVKTFDSVLAVYEGFCNLKQVDLRLKVCRGDSVRKLLVQEAKAFGVSTVILGTSKSHHTIRSSAWVAKYCAKKLHKCVSVFAVDNGKIAFQREASGQEKLHEGPHLSSKSLVIFTNKSVKNCGSCALREISETEVDQGELLDGCETENSLALVPFQKLDDDSVVGNSKQSKPGWSLIRHVFQHKKHTPKSSPKSTFVFQRALRHSSTSSHSSAVVHPDHKQINIDQIDDSNLDGVSGAIVPFGSTITLPPPTLCSDSGNLPEELLVLREKYSSSCRLYSLQELVAATVNFSSKNLVGKGGSSDVYRGCLPDGKELAVKILKQSENVLKEFTQEVEIVTTLHHKNIISLSGFCLEGNHLLLVYDFLSRGSLEENLHGDKKDYNSFGWQERYRVAVGVAEALDYLHNGCARAVIHRDVKSSNILLSDDFEAQLSDFGLASWDSSSHIICTDVAGTFGYLAPEYFMHGRVTDKIDVYAFGVVLLELLSNRKPINNECPKGQESLVMWATSILKSGKISQLLDPSLGSEYNDCQIKRMVLAATLCIRRVPRLRPQISLILKLLNGDEEVTRWAEQEVCAPETHEGFDEEPVPTNIQSHLNLALLDLEDDAVSISSSEQTVSLEDYLQGRWSRSSSFD 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04536 692 Gene3D Phosphorylase Kinase; domain 1 320 423 - -
Trre6g04536 692 ProSiteProfiles Protein kinase domain profile. 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04536 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre6g04536 692 Gene3D Transferase(Phosphotransferase) domain 1 424 634 - -
Trre6g04536 692 SMART serkin_6 349 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04536 692 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 116 - -
Trre6g04536 692 CDD USP_Like 12 137 - -
Trre6g04536 692 Gene3D HUPs 10 143 IPR014729 -
Trre6g04536 692 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 10 143 - -
Trre6g04536 692 PANTHER OS08G0249100 PROTEIN 63 630 IPR046958 -
Trre6g04536 692 Pfam Universal stress protein family 11 136 IPR006016 -
Trre6g04536 692 SUPERFAMILY Protein kinase-like (PK-like) 330 630 IPR011009 -
Trre6g04536 692 FunFam Putative receptor-like serine/threonine-protein kinase 424 634 - -
Trre6g04536 692 Pfam Protein kinase domain 350 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04536 692 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Trre6g04536 692 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 318 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04536 Trre-Chr6 48573126 48576330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04536 336 614 Trihelix Transcription Factor Family AT1G68690 44.983 2.46e-75 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre6g04536 Pkinase 5.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04536 - - gmx:100815722 1100.89