Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04524 ATGTTTTGGCCCACAAACAGGCTATTCCCTTCAGACGTTTCTGTCGCAGTGTTGGTAGGACTGCACAAGCTAAGAATAGACATTCCAATGGGCAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTGGATGCTCTGTATGTTTCTCATATCCAGGTCAACCAAGCTCAAAAGCAAAGACGTCCCTACATGTCATCTCCATGCCTCATTGAGCTGATATTGTCCAAGAAGGAAGAGGCTGTCCAGAAAGAGGTGGCTTTGTATGCTTTAATTTGGAATGAAGCATCCAAGATTTCAAATATATTATTTTTGCCCATGCTGACGATGAGGAGTTCTAGATGGAGCACCAATCTGCAATTGGCTGTGCCATATGTTCTCACTGTCATTATGCTAGAGCATTTGGGAAGATATGGACTGCGAAAGCTTTGGCAGGAATATGAATTTTGCTTGGTTGTTACCGTGGAATATCTGCAATTGGCTGCTGTTGATGTGCTTTCATTTGGGGAGAGAGCTATGAATGTACTGTGGGATTTGGAAGCTTTGAGCCTTTGGATTCAATGGGTTATTTTTTTCCTCGAGTGTTTGTTCTGCTTCCATGGTTACAGTTACACTATAGACCATCAGTGA 633 0.4265 MFWPTNRLFPSDVSVAVLVGLHKLRIDIPMGKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRPYMSSPCLIELILSKKEEAVQKEVALYALIWNEASKISNILFLPMLTMRSSRWSTNLQLAVPYVLTVIMLEHLGRYGLRKLWQEYEFCLVVTVEYLQLAAVDVLSFGERAMNVLWDLEALSLWIQWVIFFLECLFCFHGYSYTIDHQ 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04524 210 Pfam Ribosomal protein L22p/L17e 32 64 IPR001063 GO:0003735|GO:0005840|GO:0006412
Trre6g04524 210 SUPERFAMILY Ribosomal protein L22 32 78 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre6g04524 210 PANTHER 60S RIBOSOMAL PROTEIN L17 30 86 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre6g04524 210 Gene3D Ribosomal protein L22/L17 28 82 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04524 Trre-Chr6 48398269 48405447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04524 32 86 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 72.308 2.49e-24 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04524 K02880 - aew:130796519 95.5153