Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04514 ATGAAGAAACAATGGTGTGAGATTGAGGCAATAGGAATCAATTACATGATCCACAGCACACAAACAACAAAACAACCTTTTAAAATCTTCAACAAACCTCCAAAACCAGAAGATGAAGCAAAAGCTGACCAATGGCCAAGTAGGGGAGTTAAGCATGTTCTCAAGGATGTTAATTGCATAGCCAAGCCATGTGAAATTCTTGCAATTGTTGGGCCAAGTGGAGCAGGAAAATCATCACTGCTTGAGATTCTTGCTGGTAGAGTTAGTCCACAAAATGGCGGTTCAATCTTGGTGAATCAAGAGCATATAGATAAATCTCAGTTCAGGAAAATTTCAGGGTATGTTACACAAAAGGATACCCTTTTTCCGTTACTTAAAGTTGAAGAAACCATGATGTTTAGTGCAAAACTACGGCTAAATCTTCCTCGAGAAAAACTATGCTCCAAGGTTAAGTCTCTGATTCAAGAGCTTGGTCTTAGTCATGTAGCTACGACTAGAGTAGGAGATGGAGATGACAGGGTCCGTGGAATATCCGGTGGCGAGAGGCGCCGAGTTTCAGTTGGTGTTGAAGTCATACATGATCCAAAAGTGTTGATTCTTGATGAAGCAACTTCGGGTCTTGACAGTACCTCAGCTTTGCAAATAATTGATATGCTTAAAGTCATGGCTGAATCTAGGGGAAGAACTATAATACTAAGTATTCATCAACCCGGGTTCAGGATAGTGAAGCTGTTCAATTCAATACTGTTGTTAGCCAATGGCAGTGTGTTACATCATGGTACTGTGGATCTGTTGGATGTGAATCTAAGGTTGATGGGTTTAGAGCTTCCTCTTCACGTTAATGTTGTTGAGTTTGCTATGGAATCCATTGAGACCATTCAGCAACAACAACAGCAAAAAAGTCAGCAAGTTCAGGTCGAAGCACCGAAACAATTACTAGGGACGATGCGACTAAAGAAAGCTGATGATCAAGGTGAAAGTAGAAGTGGTAAGTTTACTCTACAACAGCTATTTCAACAATCCAAGGTATTTGACATAGAAAACATGAATGTAGGAATGGATTTCTCTTGTCATCATGCTAATTCTAGATTCAGAGAAACTGTGATTCTTGCTCATAGGTTCTCCAAAAACATCATTCGTACAAAAGAGCTGTTTGCATTCAGGACAATTCAGATGCTGATTTCTGGGCTGATTTTGGGATCCATCTATGGTAATCTCAAAGATGGTATAGTGGGAGCAGAACAAAGGGTTGGTCTATTTGCTTTCATATTAACGTATTTGTTAACAAGCACCATTGAAGCTCTGCCAATTTTTCTGCAAGAAAGGGAGATTCTGATGAAGGAGATTTCAAGTGGAAGCTACAGAGTTTCATCCTATGCTATTGCTAATGGCCTAGTTTACTTGCCATTTCTACTCATATTAGCCATTTTATTCGCAGTGCCACTATACTGGCTTATCGGTCTCAACCAAAATTTCACAGCATTTTTGCACTTTTTGTTACTAATATGGCTGATTTTGTATACCGCGAATTCGGTTGTGGTATGTTTCAGTGCTCTGGTGCCTAATTTCATCGTTGGAAATTCAGTAATTGCCGGTGTCATTGGTTCATCTTTTTTGTTCTCTGGTTACTTCATATCCAATCATGAAATTCCGAAGTACTGGATTTTCATGCATTATTTGTCCCTATTTAAGTATCCTTTCGAAGGGTTTCTAATCAATGAGTTCTCCAACTCAAAGAAGTGCTTGGAGTATATGTTTGGGGCATGTGTGATGAGGGGAGAGGATGTACTTAAAGAAGAAGGGTATGGAGATACAGATGCACACAGAGTGTCAGCTTCTGAAAACCATGGTGATTCCTCAAGAGAGTTCACATGGCTTGTACTTTTCTGCGGATAG 1896 0.3982 MKKQWCEIEAIGINYMIHSTQTTKQPFKIFNKPPKPEDEAKADQWPSRGVKHVLKDVNCIAKPCEILAIVGPSGAGKSSLLEILAGRVSPQNGGSILVNQEHIDKSQFRKISGYVTQKDTLFPLLKVEETMMFSAKLRLNLPREKLCSKVKSLIQELGLSHVATTRVGDGDDRVRGISGGERRRVSVGVEVIHDPKVLILDEATSGLDSTSALQIIDMLKVMAESRGRTIILSIHQPGFRIVKLFNSILLLANGSVLHHGTVDLLDVNLRLMGLELPLHVNVVEFAMESIETIQQQQQQKSQQVQVEAPKQLLGTMRLKKADDQGESRSGKFTLQQLFQQSKVFDIENMNVGMDFSCHHANSRFRETVILAHRFSKNIIRTKELFAFRTIQMLISGLILGSIYGNLKDGIVGAEQRVGLFAFILTYLLTSTIEALPIFLQEREILMKEISSGSYRVSSYAIANGLVYLPFLLILAILFAVPLYWLIGLNQNFTAFLHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVIAGVIGSSFLFSGYFISNHEIPKYWIFMHYLSLFKYPFEGFLINEFSNSKKCLEYMFGACVMRGEDVLKEEGYGDTDAHRVSASENHGDSSREFTWLVLFCG 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04514 631 SMART AAA_5 63 399 IPR003593 GO:0016887
Trre6g04514 631 FunFam ABC transporter G family member 5 39 302 - -
Trre6g04514 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 264 IPR027417 -
Trre6g04514 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 278 IPR003439 GO:0005524
Trre6g04514 631 Gene3D - 43 317 IPR027417 -
Trre6g04514 631 Pfam ABC transporter 54 205 IPR003439 GO:0005524
Trre6g04514 631 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524|GO:0016887
Trre6g04514 631 Pfam ABC-2 type transporter 368 575 IPR013525 GO:0016020|GO:0140359
Trre6g04514 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 51 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04514 Trre-Chr6 48345455 48347432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04514 45 265 Calmodulin-binding Proteins AT2G36910 27.313 3.25e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04514 K05681 - gmx:121172640 884.019