Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04511 ATGAACGAAGCTCAAACAGAAATCAACATTCCTCACTTGTTTAGATGTCCTATAAGTCTTGATTTGTTGGAAGATCCAGTGACTTTAATCACTGGCCAAACCTATGATAGATCAAGCATAGAAAAATGGATTTCTGCAGATTATTCAACAACAGTGTCACAAACAGAAGATTTATGTCATGTACTTGGAAATTCACAAAAACTAGTACATGAAATTGTTCAAGTTGTTGTAAATCAAAATAGTGATGATGATGATGATGATGATGATGAGGTTTCTATGGCAGCAATTAAGGCCTTATCTGCATTATCTTCATTGGAATCAAACAAAGAGAGTTTAGTGAAAGGAGGAGCAATAGATGGAATCATAACATATATTTCAAGATGTGAAAATGGACAAAAGATGAATTTGGCTCCACTTGCAATGGCAACATTGAAGAAACTTTTGGTTTTGGAAAGTGGTAAAGAAGCATTGGTGAATCATGTTAATGGTATTGAAACATTGGTTAAGATGGTTTTTAAGGTATGTAATCAAGAGTGTAGTGAAAGTGCTGTTGGAATACTTTCAATTGTTTGTAGTGATTTTGGGAGTGCTAGAGAAGTAGCTATTGGAGCTGGTGTTTTGAGTCAATTGTTGTTTCTTCTGCAGAGTCAATGTGGTACTAAAACTAAAACTAAGGCAAGAATGTTGCTTAAGTTGTTGAGATCAAAGTGGAGTGAAGAATCAATGCAGCTTTAG 735 0.3469 MNEAQTEINIPHLFRCPISLDLLEDPVTLITGQTYDRSSIEKWISADYSTTVSQTEDLCHVLGNSQKLVHEIVQVVVNQNSDDDDDDDDEVSMAAIKALSALSSLESNKESLVKGGAIDGIITYISRCENGQKMNLAPLAMATLKKLLVLESGKEALVNHVNGIETLVKMVFKVCNQECSESAVGILSIVCSDFGSAREVAIGAGVLSQLLFLLQSQCGTKTKTKARMLLKLLRSKWSEESMQL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04511 244 ProSiteProfiles U-box domain profile. 9 50 IPR003613 GO:0004842|GO:0016567
Trre6g04511 244 CDD RING-Ubox_PUB 11 50 IPR045210 -
Trre6g04511 244 SUPERFAMILY RING/U-box 5 49 - -
Trre6g04511 244 Pfam U-box domain 10 46 IPR003613 GO:0004842|GO:0016567
Trre6g04511 244 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Trre6g04511 244 SUPERFAMILY ARM repeat 64 233 IPR016024 -
Trre6g04511 244 Gene3D - 64 236 IPR011989 -
Trre6g04511 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 62 IPR013083 -
Trre6g04511 244 PANTHER WDSAM1 PROTEIN 57 240 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04511 Trre-Chr6 48319994 48321238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04511 8 56 U-box Gene Family AT3G19380 61.224 9.98e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04511 - - mtr:11418942 323.939