Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04505 ATGAATCTCCCATCTCTTACATTCACCCACTACCCCTCTCACCATCTTGTTTCTCCTCTCTATTGTAAACTTCCCACAGCCACTACAAGGGGAAAAAGCGTGGATAGTGTTGCAATTGAAGGTCGTAATCTGAATTTCTCATTCACTGCAAGACAAACCAAGGATGTGACAGTTCTTAGAGATTGTTCAATTCGCATTCCTTCTGGGCAATTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCAACACTCTTGAAGATTTTGGCTGGATTGTTGACTCCAACTTCAGGAACAGTATATGTGAATGAACCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTGATGCCTACAGTAGATTCTGATGTTGCATTTGGTCTTGGTCAAATCAATTTGGCTGATGATGAAGTCAGATCTAGGGTGTCACAAGCTTTACATGCTGTTGGTTTATCCGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAGGTTCTGTTATTAGATGAGCTCACAACTTTCCTAGATGAAACTGACCAGGTTGGAGTTATCAAAGCTGTTAGGAACTGTCTGGATACTTCTGAAGAAGTTACAGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAGTACGCAGATGGTGCAATCTACATGGAAGATGGAAAGGTAGTCATGCATGGAGATCCGGCAAGCATACGGAGTTTCATTGAAGACAGACAATCTGCCTATATTAACCAGATTAATTCTTAA 807 0.4213 MNLPSLTFTHYPSHHLVSPLYCKLPTATTRGKSVDSVAIEGRNLNFSFTARQTKDVTVLRDCSIRIPSGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVYVNEPKSFVFQNPDHQVVMPTVDSDVAFGLGQINLADDEVRSRVSQALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNCLDTSEEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDPASIRSFIEDRQSAYINQINS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04505 268 ProSitePatterns ABC transporters family signature. 164 178 IPR017871 GO:0005524|GO:0016887
Trre6g04505 268 SMART AAA_5 68 241 IPR003593 GO:0016887
Trre6g04505 268 Gene3D - 34 267 IPR027417 -
Trre6g04505 268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 256 IPR027417 -
Trre6g04505 268 Pfam ABC transporter 59 191 IPR003439 GO:0005524
Trre6g04505 268 CDD ABC_cobalt_CbiO_domain1 40 241 IPR015856 GO:0005524|GO:0016020|GO:0055085
Trre6g04505 268 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 39 253 - -
Trre6g04505 268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 264 IPR003439 GO:0005524
Trre6g04505 268 FunFam ABC transporter I family member 10 35 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04505 Trre-Chr6 48273577 48277093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04505 39 246 Calmodulin-binding Proteins AT2G36910 30.531 1.47e-21 92.4