Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04502 ATGCCCACGTGGTGGGGTAAAAAATCAACCAAGTCCAAGGACCTTGAGTCACGTGGCGGCGGAAGCAGCAGCAGCGGTGGCGGCGGTGGTAGTAGTAGCAGCGGTGGTGGTGTGCTTCATTTCAATTTCAACAAATCACCGATCAGAAACGGTTATTATAAACCTGAAAACCCTAACGATGGTTTGAATTTTAGAAATTCTCCCAGATCCAGTAGGGATTTTACTCCTTCAAGTGATTCCATAGGGCATCCTTTGCCGCGTCCTTCTTTTTCTTCTACACAAAGCTTTAGCAATGATCAGGGGAATACTATTACTTTTGGATCTGCTTCTGTTTCTGGTGGTTCTAGCATTAGCTCCAATGCTTCTTCTGATGATCCTTCAACTTCTAATTCTCAGATTAATACCGCTAGAGGACAATGTGAAACAAAGTTCAATGGGAGGCCTAAAAGCCCGGGTCCTGGGTTAAGAGGGCCTACCAGTCCAACATCACCTCTTCATGCAAGGTTGCATGTTTTGAGTCTCGACTCACCTACAGGTAAGCAAGAAGATGGAAGGAGTGAATGTCATCCATTGCCTCTTCCACCAGGCTCTCCAACTAGTCCTTCTTTTCCCAACAACACGAGATCAAATGTACTGCTAGAAAACAGTACCGCTAGCCGTGGCAGGTGGAAGAAAGGAAAACTTCTAGGTCGGGGAACATTTGGGCATGTTTACTTGGGATTCAATAGTGAAAGTGGACAATTGTGTGCAATAAAAGAAGTCAGGGCTGTCGGTGATGATCAAACCTCAAAAGAGTGTCTCAAACAACTTAATCAGGAGATAGATTTGCTGAGTCAGCTTTCACATCCAAACATTGTTCAATACCATGGAAGTGATATGGGAGAAGAAACACTTTCCGTTTATTTGGAATATGTCTCTGGAGGTTCTATTCATAAATTACTTCAGGAATATGGGTCCTTCAAGGAGCCTGTCATCCAAAATTATAGCAGGCAGATTCTCTCTGGACTTTCCTATCTTCATTCGAGAAATACAGTGCATAGGGATATTAAAGGGGCGAACATACTAGTTGATCCTAATGGTGTAATCAAGTTGGCGGACTTTGGAATGGCTAAACATATAAATTCTTCTTCTTCAATGCTTTCTTTCAAAGGAAGTCCACACTGGATGGCACCAGAGGTTGTAATGAATACAAATGGCTATAGTCTTCCTGTTGATATTTGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCTTGGAGTCAGTATGAAGGGGTGGCTGCAATATTTAAAATTGGTAACAGCAAAGACATGCCTGAAATTCCCGACCATCTCTCAAATGATGCAAAGAATTTTATTAAGCTATGCTTGCATAGAGATCCTTCAACTCGCCCTACAGCCCAAATGTTACTAAATCACCCCTTCATTCGTGATCAGTCAGCAACAAAAGCTGCTAATGTCAGAATAACCAGGGATGCTTTTCCATGCATGTTTGATGGAAGCCGGACGCCGCCAGCTTCAGATCTTCATTCCAGTCGAACTTGTATTGCTTCTCAGGATGCAGATTATGCAACAAAAACAGTTGTTGCAGCTTCACGAACTCCAAGGAGCCCAAGAGACAACACAAGAACGATCACATCTTTGCCTGTATCTCCGTGTTCAAGTCCATTGCGACAGTATGGTGCTGCACACAAGAGCGGTTTCCTTTCTCCTCCTCATCCAAGCTATACAATGATGGGACAAAAGCCCCTTGTTTCATATGAATCATATCCAATGAGATCAAATACCAAGTTTACTCTTGATCCTTGGCATGAAACATCTATGTACAAAGCCCACACACCTGGTGGATCCCCAAGAAGACTTATTTGA 1878 0.4324 MPTWWGKKSTKSKDLESRGGGSSSSGGGGGSSSSGGGVLHFNFNKSPIRNGYYKPENPNDGLNFRNSPRSSRDFTPSSDSIGHPLPRPSFSSTQSFSNDQGNTITFGSASVSGGSSISSNASSDDPSTSNSQINTARGQCETKFNGRPKSPGPGLRGPTSPTSPLHARLHVLSLDSPTGKQEDGRSECHPLPLPPGSPTSPSFPNNTRSNVLLENSTASRGRWKKGKLLGRGTFGHVYLGFNSESGQLCAIKEVRAVGDDQTSKECLKQLNQEIDLLSQLSHPNIVQYHGSDMGEETLSVYLEYVSGGSIHKLLQEYGSFKEPVIQNYSRQILSGLSYLHSRNTVHRDIKGANILVDPNGVIKLADFGMAKHINSSSSMLSFKGSPHWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPDHLSNDAKNFIKLCLHRDPSTRPTAQMLLNHPFIRDQSATKAANVRITRDAFPCMFDGSRTPPASDLHSSRTCIASQDADYATKTVVAASRTPRSPRDNTRTITSLPVSPCSSPLRQYGAAHKSGFLSPPHPSYTMMGQKPLVSYESYPMRSNTKFTLDPWHETSMYKAHTPGGSPRRLI 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04502 625 ProSiteProfiles Protein kinase domain profile. 223 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04502 625 ProSitePatterns Protein kinases ATP-binding region signature. 229 252 IPR017441 GO:0005524
Trre6g04502 625 MobiDBLite consensus disorder prediction 60 141 - -
Trre6g04502 625 CDD STKc_MEKK1_plant 222 479 - -
Trre6g04502 625 SUPERFAMILY Protein kinase-like (PK-like) 221 545 IPR011009 -
Trre6g04502 625 FunFam Mitogen-activated protein kinase kinase kinase 221 503 - -
Trre6g04502 625 Pfam Protein kinase domain 224 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04502 625 SMART serkin_6 223 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04502 625 MobiDBLite consensus disorder prediction 1 207 - -
Trre6g04502 625 Gene3D Transferase(Phosphotransferase) domain 1 220 498 - -
Trre6g04502 625 MobiDBLite consensus disorder prediction 534 553 - -
Trre6g04502 625 MobiDBLite consensus disorder prediction 16 40 - -
Trre6g04502 625 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 69 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04502 Trre-Chr6 48254883 48260591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04502 1 542 MAP Kinase Kinase Kinase AT1G53570 55.950 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Trre6g04502 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04502 K04421 - gmx:100813122 876.7