Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04492 ATGGCCGAACCAAAATTGATTCCAGGGTTTCGGTTTCATCCCACTGATGTTGAGCTCGTTATGTATTTTCTCAAGAGGAAGATTATGGGTAGAAAATTCCCTTTTGATGTCATTGCTGAACTTGACATTTACAAGTATGCTCCATGGGATCTACCAGATAAATCTTTGCTCAAAAGTGGTGATTTGAAATGGTACTTCTTTAGCCCTACAGGAAAGAAATACTCCGTTGGAGGGAGGATGAATCGAGCAACGGAGATTGGGTTCTGGAAGACTACGGGGAAGGATAGATCAATTCAACATAACAATCAAGTGGTGGGGATGATAAGAACCCTGGTGTTTCACATTGGAAAAGCTCCTAAAGGAGACCGAACTGATTGGGTTATGCATGAGTTCAGACTTGATGATAAATACCAAGCTGACAAAGGCATTCCACAGAGTTCCTATGTGATTTGCAGGGTATTTCAAAAGGAAGGTCCTGGTCCCAGGAATGGTGCACAGTATGGAAAACCATTTAATGAGAAAGACTGGGATAGTGAAGAGGAAATTGATTGTGTAGAAGCTGTCCCTGTTGCTGTTGTGTCTGCACCAGCTCCTATTCTACCTGGCCCAAGCCATATTTCTGCAGCAAATGACATGCATCCATCGGCAAGTGGATGCATTGGACCGACCTCTGTATCATGTCTATCAAGATTGATGCCCTCTGACTTGACACAGCCTTCAGCTCCAAGCAATCAAGTTGACGACGGCATTTTATCCATGCTTGCTATTTTCAAAGATGATAATACATTGGCGGGGAATGAAAACAATGAATCTGAGATGGTTGGTAGTCCTGGTCAGGCAAACAATGCCGAAGGTGCACCTTATTTAGATCCAAATGAGATTTTTGACGAGTTGGTAGATCTTCACAGCTTGGTTGGATTGGATGAAGGAGGCGGCTTTTCGTATGGCCAAAAAGATGAATATACAAAAACCGAAATGCTTTCTACGGACAACGTCTCTTTGTTTCACGACCCCTATGATTTCGTAGAGTTGAATGACCTAGAGGTGCCATTATCCTGGCAGACTAAACGCGATGGAAGTTGGGGCCAAGATAAGCAAGCTTAA 1104 0.433 MAEPKLIPGFRFHPTDVELVMYFLKRKIMGRKFPFDVIAELDIYKYAPWDLPDKSLLKSGDLKWYFFSPTGKKYSVGGRMNRATEIGFWKTTGKDRSIQHNNQVVGMIRTLVFHIGKAPKGDRTDWVMHEFRLDDKYQADKGIPQSSYVICRVFQKEGPGPRNGAQYGKPFNEKDWDSEEEIDCVEAVPVAVVSAPAPILPGPSHISAANDMHPSASGCIGPTSVSCLSRLMPSDLTQPSAPSNQVDDGILSMLAIFKDDNTLAGNENNESEMVGSPGQANNAEGAPYLDPNEIFDELVDLHSLVGLDEGGGFSYGQKDEYTKTEMLSTDNVSLFHDPYDFVELNDLEVPLSWQTKRDGSWGQDKQA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04492 367 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
Trre6g04492 367 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 4 234 - -
Trre6g04492 367 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre6g04492 367 MobiDBLite consensus disorder prediction 264 278 - -
Trre6g04492 367 FunFam Nac domain-containing protein 86 15 159 - -
Trre6g04492 367 Pfam No apical meristem (NAM) protein 8 133 IPR003441 GO:0003677|GO:0006355
Trre6g04492 367 SUPERFAMILY NAC domain 3 156 IPR036093 GO:0003677|GO:0006355
Trre6g04492 367 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04492 Trre-Chr6 48191111 48194767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04492 1 355 NAC Transcription Factor Family AT5G09330 44.444 6.94e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre6g04492 NAM 4.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04492 - - adu:107470479 466.848