Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04489 ATGGCTACCGCCGTAGACTCTTCCCGTCAACTATCTCAAAAGGAAGCTGACATCCAGATGATGTTGGCCGCCGATGTCCATCTCGGCACCAAGAACTGTGACTTCCAAATGGAGCGTTACATTTTCAAACGCCGAAATGACGGTATTTATATTATTAATCTTGGAAAGACATGGGAGAAGCTTCAACTAGCTGCTAGGGTCATTGTTGCCATCGAGAATCCTCAGGATATTATTGTCCAATCTGCAAGGCCTTATGGACAGAGAGCTGTTCTCAAGTTTGCTCAGTACACTGGAGCTCATGCCATTGCTGGAAGGCACACTCCCGGAACATTTACCAATCAGCTTCAGACTTCTTTCAGTGAGCCCCGTCTTCTTATCCTCACTGATCCAAGAACTGATCACCAGCCAATCAAGGAAGCTGCTCTTGGAAATATTCCCACAATTGCTTTCTGTGACACTGATTCTCCTATGAGGTATGTTGACATTGGAATTCCTGCTAACAACAAGGGAAAGCATAGCATTGGTTGTCTCTTCTGGCTTTTGGCTAGGATGGTTTTGCAGATGCGTGGTACTATTCGCCCTGGTCTTAAGTGGGATGTCATGGTTGATCTCTTCTTCTATAGAGAACCAGAAGAGGCCAAGGAGCAAGAAGAGGATGATGTTCCTGCTCCAGATTATGCTATTGCTGATTTCAATGCAGCTTCTATCCCCACTGATGGACAGTGGCCATCTGCTATTGATCAGCCATGGACCGATGCTGTTCCTGAACCTATTCCAGCGGTTCCTGCTGTCAACTGGTCTGCCCCAGAAGCTGTTGCAGGGGACTGGGGTGAAGCTGTTCCACCACCACAACAAATACCTGCTCCCGGAGTTGAATCCATCCAGGCAACTGGCTGGGAATAA 903 0.4751 MATAVDSSRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKEQEEDDVPAPDYAIADFNAASIPTDGQWPSAIDQPWTDAVPEPIPAVPAVNWSAPEAVAGDWGEAVPPPQQIPAPGVESIQATGWE 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04489 300 ProSitePatterns Ribosomal protein S2 signature 2. 122 146 IPR018130 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 FunFam 40S ribosomal protein SA 17 223 - -
Trre6g04489 300 MobiDBLite consensus disorder prediction 274 300 - -
Trre6g04489 300 PRINTS Ribosomal protein S2 signature 97 114 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 PRINTS Ribosomal protein S2 signature 48 57 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 PRINTS Ribosomal protein S2 signature 18 36 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 PRINTS Ribosomal protein S2 signature 122 139 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 PRINTS Ribosomal protein S2 signature 139 150 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 PRINTS Ribosomal protein S2 signature 160 174 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 PANTHER 40S RIBOSOMAL PROTEIN SA 7 299 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre6g04489 300 NCBIfam 30S ribosomal protein S2 13 209 IPR005707 GO:0003735|GO:0006412|GO:0015935
Trre6g04489 300 Gene3D - 17 221 - -
Trre6g04489 300 SUPERFAMILY Ribosomal protein S2 13 203 IPR023591 -
Trre6g04489 300 Hamap 40S ribosomal protein SA [rps-0]. 5 269 IPR027498 GO:0003735|GO:0006412|GO:0015935
Trre6g04489 300 CDD RPS2 21 187 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 Pfam Ribosomal protein S2 120 185 IPR001865 GO:0003735|GO:0005840|GO:0006412
Trre6g04489 300 Pfam Ribosomal protein S2 21 115 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04489 Trre-Chr6 48165782 48167691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04489 7 276 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.286 1.00e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04489 K02998 - gmx:548014 536.954