Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04488 ATGGTAAAGTCTCAAAGCAAAGGGAGACTTGCCATTTTGGAATTTGCACACATGATGAGTGCTCCTATGTCCCTCATTGCTGTCCTTAATATGAAGGTACCTGATGCTATTTGGCAAGGTGGCCATAACACTCCACTCTCTGCCTCTCAGATTCTCTCCGTTGTCCGTCCTAACGGCACCGGAGATGCTGAGAACCTCCAGCGTATTCTCCGCTTGCTCACCACTTATGATATTTTTGCCGAACACTTGAGCAGTAACGGCGAAAGAAAGTACTCTCTTACGGATGTCGGTAAAACTCTTGTCCCCGATGGTGATGGTCTATCCTATGCACCATACATGCTCCAACACCATCAGGATGCCTTGATGCGAGCATGGCCGATGGTGGGAGAGGCAGTGGAGGATCCAACGGTGGAGCCGTTCAAGAAGGCAAACGACGGAGAATCAGCATATGGATACTACATGAAGAGACCAGATGAAATTTCTTTGTTTTACACTTCCATGATTGGGATGTCAGTGCCCTTCATAAGAGAAATGTTGGAGAGTTATGATGGTTTCAAAGGTGTGGAAACTCTTGTCGATGTTGGTGGTAATTCTGGTGTGACTCTCAACATGATTATGCACAAATATCCAAACATACTCAAAGGCATCAATTATGATTTTCCTGATATGGTATCTTCTGCACCTCAATATCCACGTATAACACACGTTGGAGGTGACGCGCTTCAATCGGTTCCGACTGGGGATGCTATCTTCATGAAGTGGATATTTTTAACATGGACAGACGAAGAATGCAAGAAAGCCTTGCAGAACTGTTACAAGGCTCTTCCGGTGAACGGAAAATTGATTGTTTGTGAGCCAGTGCTACCGGAGCTGACCGATGAGAGTCAAAGAACAAGAGCATTGTTAGGGGGTGACATATTCATAATGACAATGTATAGAACCAAGGGAAAACACAGAACTGAGGAACAATTCAAACAACTTGGCATTTCTATTGGTTTTCTTCGTTTTCGTGCCTTCTATATCGATCCTTATTTTCCCATACTCGAATTTCAGAAATGA 1059 0.4419 MVKSQSKGRLAILEFAHMMSAPMSLIAVLNMKVPDAIWQGGHNTPLSASQILSVVRPNGTGDAENLQRILRLLTTYDIFAEHLSSNGERKYSLTDVGKTLVPDGDGLSYAPYMLQHHQDALMRAWPMVGEAVEDPTVEPFKKANDGESAYGYYMKRPDEISLFYTSMIGMSVPFIREMLESYDGFKGVETLVDVGGNSGVTLNMIMHKYPNILKGINYDFPDMVSSAPQYPRITHVGGDALQSVPTGDAIFMKWIFLTWTDEECKKALQNCYKALPVNGKLIVCEPVLPELTDESQRTRALLGGDIFIMTMYRTKGKHRTEEQFKQLGISIGFLRFRAFYIDPYFPILEFQK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04488 352 Gene3D Vaccinia Virus protein VP39 106 352 IPR029063 -
Trre6g04488 352 PANTHER O-METHYLTRANSFERASE 18 339 IPR016461 GO:0008168
Trre6g04488 352 Pfam O-methyltransferase domain 127 333 IPR001077 GO:0008171
Trre6g04488 352 Gene3D - 2 105 IPR036388 -
Trre6g04488 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 105 349 IPR029063 -
Trre6g04488 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Trre6g04488 352 SUPERFAMILY "Winged helix" DNA-binding domain 7 103 IPR036390 -
Trre6g04488 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 13 352 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04488 Trre-Chr6 48157975 48159639 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04488 3 352 Monolignol Biosynthesis Gene Families AT3G53140 61.017 6.56e-162 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04488 - - ccaj:109819366 509.22