Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04487 ATGCAGAACGGGAAAGTTGCAATGGTAAAGTCTCAAAGCAAAGGGAGACTTGCCATTTTGGAATTTGCACACATGATGAGTGCTCCTATGTCCCTCATTGCTGTCCTTAATATGAAGGTACCTGATGCTATTTGGCAAGGTGGCCATAACACTCCACTCTCTGCCTCTCAGATTCTCTCCGTTGTCCGTCCTAACGGCACCGGAGATGCTGAGAACCTCCAGCGTATTCTCCGCTTGCTCACCACTTATGATATTTTTGCCGAACACTTGAGCAGTAACGGCGAAAGAAAGTACTCTCTTACGGATGTCGGTAAAACTCTTGTCCCCGATGGTGATGGTCTATCCTATGCACCATACATGCTCCAACACCATCAGGATGCCTTGATGCGAGCATGGCCGATGGTGGGAGAGGCAGTGGAGGATCCAACGGTGGAGCCGTTCAAGAAGGCAAACGACGGAGAATCAGCATATGGATACTACATGAAGAGACCAGATGAAATTTCTTTGTTTTACACTTCCATGATTGGGATGTCAGTGCCCTTCATAAGAGAAATGTTGGAGAGTTATGATGGTTTCAAAGGTGTGGAAACTCTTGTCGATGTTGGTGGTAATTCTGGTGTGACTCTCAACATGATTATGCACAAATATCCAAACATACTCAAAGGCATCAATTATGATTTTCCTGATATGGTATCTTCTGCACCTCAATATCCACGTATAACACACGTTGGAGGTGACGCGCTTCAATCGGTTCCGACTGGGGATGCTATCTTCATGAAGTGGATATTTTTAACATGGACAGACGAAGAATGCAAGAAAGCCTTGCAGAACTGTTACAAGGCTCTTCCGGTGAACGGAAAATTGATTGTTTGTGAGCCAGTGCTACCGGAGCTGACCGATGAGAGTCAAAGAACAAGAGCATTGTTAGGGGGTGACATATTCATAATGACAATGTATAGAACCAAGGGAAAACACAGAACTGAGGAACAATTCAAACAACTTGGCATTTCTATTGGTTTTCTTCGTTTTCGTGCCTTCTATATCGATCCTTATTTTCCCATACTCGAATTTCAGAAATGA 1080 0.4426 MQNGKVAMVKSQSKGRLAILEFAHMMSAPMSLIAVLNMKVPDAIWQGGHNTPLSASQILSVVRPNGTGDAENLQRILRLLTTYDIFAEHLSSNGERKYSLTDVGKTLVPDGDGLSYAPYMLQHHQDALMRAWPMVGEAVEDPTVEPFKKANDGESAYGYYMKRPDEISLFYTSMIGMSVPFIREMLESYDGFKGVETLVDVGGNSGVTLNMIMHKYPNILKGINYDFPDMVSSAPQYPRITHVGGDALQSVPTGDAIFMKWIFLTWTDEECKKALQNCYKALPVNGKLIVCEPVLPELTDESQRTRALLGGDIFIMTMYRTKGKHRTEEQFKQLGISIGFLRFRAFYIDPYFPILEFQK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04487 359 PIRSF O-mtase 1 359 IPR016461 GO:0008168
Trre6g04487 359 Gene3D - 3 112 IPR036388 -
Trre6g04487 359 PANTHER O-METHYLTRANSFERASE 25 346 IPR016461 GO:0008168
Trre6g04487 359 SUPERFAMILY "Winged helix" DNA-binding domain 14 110 IPR036390 -
Trre6g04487 359 Gene3D Vaccinia Virus protein VP39 113 359 IPR029063 -
Trre6g04487 359 Pfam O-methyltransferase domain 134 340 IPR001077 GO:0008171
Trre6g04487 359 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 359 IPR016461 GO:0008168
Trre6g04487 359 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 112 356 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04487 Trre-Chr6 48157975 48159660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04487 10 359 Monolignol Biosynthesis Gene Families AT3G53140 61.017 5.84e-162 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04487 - - ccaj:109819366 509.22