Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04482 ATGAGTGGAACTGACAGAAAGCGCTCTTCAAAGTGGGATTTGAGTGATGAACACAAATTCCCATCTGGTAGCAAGCAAATGCGATCTGGGTGGTCCTCTGCAGATGTTGCTGGTAATAATAGTTCAAAATGGGCTTATTCGGAAGGAAATGATAAATTAAGACCTGTTATGGGATATTCATCAAAAGAATCTTTTTCTGGAGGTAGAGGTTCATATGAGGATGATGCTATGAATGAAGACCATAGAATTTCGGATAGAAGAAGAGAATGGGAGACTGATGGAAGTTACAGCAAGAAAATCTCTCCTTGGCAAGGGGAATGGGGACAAAAGAGGCACAGTCAATCTCCTATAAATGGTTGGAGCAGGAGCAGTCGGAGCCGGAGTCAGAGTCGGAGCCCTCCTCGTGGTTTTAGGCGGGATTCAGGCGTTGATGAGAGAAAAAGGATGAGGGTTGTAGGATCAACACGACCGTGCAGAGATTTTGCTGCTGGTAAATGCAGAAGAGGAAGTCTTTGCAATTTTTTGCATCATGATAACCAAAGTCGTGAGAATAGTTGGGAGGGTAAGCACAGGGAGGATAGAGCTCCCAGATACTCTGCTACCCATGAAAGAGGTGACCATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTACAAATTTTGCAAATGGCAGTTGTAGAATGGGAGCATCTTGCAAGTTTATGCATGATAGCGACTCTGATGGATATGGTAAAGTTTCTATGGATGAATTCACTAGAGAAAGGGAAGATAGAGCTCCCAGATATCCTGCTACCCATGAGGGCGGGGACCATTCTCTTAAGAGGGGCAGATCTAATGAAGTTTGTACAAGTTTTGCAAAAGGGAGGTGTAGAATGGGAACATCTTGCAAGTTTGTGCATGATAACGACTCTGATGGATATGGCAAAGTTTTTATGGATGAATTCACTAGAGAAAAGGAAGTTGACAGAAGGCACAGAGATAATTCTTTTGAGCAGGGTGGCCGGCATGTGCCTAATCGCACTAGTGATACTCCTTGCAAATTTTTTGCTAATGGAAATTGTCGAAATGGTAAATTTTGCAAGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATTAAGGGATGATAGATGGGCAAGAAATCCAGGTAGAGATCATCAAATGTTGGATAGACAAAAATTGAGTGATTCCATTAGTCCAAATAGAAGGCTAAGAGATGATAGATGGGGTTCAGATGGCGATGTGGCTGATCCAGATAGAGTTGGGGACAGTCCAAAGCGAAATAATACTGTTTCTGTTTCTGATACAACAAAGCTGATCGAGAATAAAAGTGGAAATGTAGATGCCACAGACCCAGGATTTACTACTTTATCTATGACGGATGGATATGGGCATGAATTAGATAAGAGTGAGCTGCATGGTAAACCACCAATTTCGAGTGATACGAAGGAAGCTGATTGTTGGATAGAAGAAGATACCGGTGCCAACATGCATGGATCCCATTCAATAGTTAAAACAGACATTTGGCCAGGTGATGCAGAAATGTCTCCTGATTGGAATTATAAGACAGGATCTTCCAGCCATATGGAAGAACCTGGACAGAATAAGCACGGTATAAGGCAGGGTGGTACGCATTTTGCCATCTCAGAACCCGACAGAGTACAACTTGCTCCAGGACAAAGCATCAATCAGAATGCACAGAATGTAAATCCTTTGCATACTTCCAGCTGCCATGCAGTTGGACAAAGTCAAGTGGATGTTCCCATTCTTCCTTCAAGTGGAGGAATTGTTGATGCTACGCACAGACAAGAAGTATCTAATGAGAAGAAGTACATTGTGGAACCAAATATCACGGATTCAGGCTTATCACAAGTTAGTTCAATAAATCCTCCAACACAAAACGCCGTAAGCAATGAACAGCTTGCTCAACTTACGACCTCTCTGGCTCATTTCCTAGGAGGAGGTCAGCAGCTACCGCAGCTATATGCTGCTTTAAATTCTCACGATTTAAAGGACAGTCCTACCCAAGCAAAAACTCAAGTGCCTGCAATGCCTGTTTCAATCACATGCATCAAGCCTGATCCTGCCGTTGGACTCTCAAAGCAGTATGGTCCTGTGAGTGATAGTATTGAGCAAACAAATGCTGATGCAAGTGGTGTTCCCCCAGCCATTCCTCCAAGTACAAATATTGCTGAAGTGGAAATTCTGTCACAGTTGTCTAACTCTGGAAGACAAAATTTTGGTGATTCTATTAAGGGTGCCTCCTCAGAACTCGTCAAGAGTGATAATCTAAACCATTTGCAGCCTGGTCAAAACACAGTGGTGAAGAATAAGGATAACAATGAAGAGGTAGCTAAGGAAAGGAACAATCCTGAAGATGGTCATAAAAGTACAAAAGAGAACGGTCCGCAAAACACAGACCAAAATGGTAGGCCTGATGATGCAAAGCAAACAAAGGATTTGAAAGGGATTCGTACGTTTAAATTTGCATTGGCTGAGGTTGTTAAGGAGCTATTGAAACCAGCATGGAAAGAAGGTCAAATAACTAATAAAGAAGATTATAAAACCATTGTGAAGAAAGTTCTTGATAAAGTAACAGCTACCATGCAGGGACCCAATATTCCTCAGACACAAGAGAAAATTGACCAATATTTGTCATTTTCAAAACCAAAGCTTAACAAACTTGTACAGGCATATGTGGAAAAGGTTCAGAAGCCTCAGTGA 2733 0.4204 MSGTDRKRSSKWDLSDEHKFPSGSKQMRSGWSSADVAGNNSSKWAYSEGNDKLRPVMGYSSKESFSGGRGSYEDDAMNEDHRISDRRREWETDGSYSKKISPWQGEWGQKRHSQSPINGWSRSSRSRSQSRSPPRGFRRDSGVDERKRMRVVGSTRPCRDFAAGKCRRGSLCNFLHHDNQSRENSWEGKHREDRAPRYSATHERGDHSLKSGRSNEACTNFANGSCRMGASCKFMHDSDSDGYGKVSMDEFTREREDRAPRYPATHEGGDHSLKRGRSNEVCTSFAKGRCRMGTSCKFVHDNDSDGYGKVFMDEFTREKEVDRRHRDNSFEQGGRHVPNRTSDTPCKFFANGNCRNGKFCKFSHDRQACRSPNRRLRDDRWARNPGRDHQMLDRQKLSDSISPNRRLRDDRWGSDGDVADPDRVGDSPKRNNTVSVSDTTKLIENKSGNVDATDPGFTTLSMTDGYGHELDKSELHGKPPISSDTKEADCWIEEDTGANMHGSHSIVKTDIWPGDAEMSPDWNYKTGSSSHMEEPGQNKHGIRQGGTHFAISEPDRVQLAPGQSINQNAQNVNPLHTSSCHAVGQSQVDVPILPSSGGIVDATHRQEVSNEKKYIVEPNITDSGLSQVSSINPPTQNAVSNEQLAQLTTSLAHFLGGGQQLPQLYAALNSHDLKDSPTQAKTQVPAMPVSITCIKPDPAVGLSKQYGPVSDSIEQTNADASGVPPAIPPSTNIAEVEILSQLSNSGRQNFGDSIKGASSELVKSDNLNHLQPGQNTVVKNKDNNEEVAKERNNPEDGHKSTKENGPQNTDQNGRPDDAKQTKDLKGIRTFKFALAEVVKELLKPAWKEGQITNKEDYKTIVKKVLDKVTATMQGPNIPQTQEKIDQYLSFSKPKLNKLVQAYVEKVQKPQ 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04482 910 MobiDBLite consensus disorder prediction 1 148 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 180 212 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 107 131 - -
Trre6g04482 910 Gene3D - 338 410 - -
Trre6g04482 910 Pfam RNA-binding, Nab2-type zinc finger 217 236 - -
Trre6g04482 910 Pfam RNA-binding, Nab2-type zinc finger 282 300 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 782 803 - -
Trre6g04482 910 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Trre6g04482 910 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 345 365 IPR000571 GO:0046872
Trre6g04482 910 ProSiteProfiles Zinc finger C3H1-type profile. 340 367 IPR000571 GO:0046872
Trre6g04482 910 ProSiteProfiles Zinc finger C3H1-type profile. 153 179 IPR000571 GO:0046872
Trre6g04482 910 MobiDBLite consensus disorder prediction 180 211 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 766 781 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 1 23 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 133 148 - -
Trre6g04482 910 ProSiteProfiles Zinc finger C3H1-type profile. 212 239 IPR000571 GO:0046872
Trre6g04482 910 MobiDBLite consensus disorder prediction 25 47 - -
Trre6g04482 910 SMART c3hfinal6 154 178 IPR000571 GO:0046872
Trre6g04482 910 SMART c3hfinal6 213 238 IPR000571 GO:0046872
Trre6g04482 910 SMART c3hfinal6 340 366 IPR000571 GO:0046872
Trre6g04482 910 SMART c3hfinal6 277 302 IPR000571 GO:0046872
Trre6g04482 910 MobiDBLite consensus disorder prediction 73 95 - -
Trre6g04482 910 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 253 908 - -
Trre6g04482 910 SUPERFAMILY CCCH zinc finger 342 365 IPR036855 GO:0046872
Trre6g04482 910 MobiDBLite consensus disorder prediction 371 438 - -
Trre6g04482 910 Gene3D - 201 266 - -
Trre6g04482 910 Gene3D - 144 200 - -
Trre6g04482 910 Gene3D - 267 332 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 321 342 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 371 427 - -
Trre6g04482 910 MobiDBLite consensus disorder prediction 766 823 - -
Trre6g04482 910 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04482 Trre-Chr6 48129809 48134584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04482 163 300 C2H2 Transcription Factor Family AT3G02830 29.078 2.29e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre6g04482 zf-CCCH 1.2e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04482 - K22909 gmx:100783856 1048.11