Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04480 ATGCTCAATTCCATCCTACATGCTTCCGTAGGTAATCACTCTCGCATAACCGCTGCTAAAAGCTGTCTTCAAGTTTTTCAATACTCTCACCACCGTATTTCTCTAACCGTCGAAGCACTCTCACGTGGTAGAATCAAAGACGCACGTGCTTTCATGAGTGCTGCATTGGCTTATCAGTATAATTGTTGGTCTGGTCTCAAATACGCTAACGATACTCAATTGGTTTTCAAAACCATGTCGTTTCTTGATTCTCTCACCAATCTCTCGAGTAATGCTCTTAGTATGATTCTCTCCTATGATTTATTCGGTAACGATACTGATTTATGGAGGCCGCCGAGAACTGAACGAGATGGTTTTTGGGAGGATTCTGGTTCCGGTGTGTTTGGGGCGGGGCCGTCTGTACCGGTGAATCTTAAGCCGGATGTTACCGTGTGTAAGGAGAAGGGCAGTGGGTGTTATGGGACGGTGCAGGAAGCGGTTGACGCCGCGCCTGATAACGTGGATGTTGGTGGAGGGAGATTTGTGATACATATAAAGGAAGGGGTTTATGAAGAGAGAGTTAGGGTTCCGTTAAGGAAGAGGAATGTTGTATTTTTGGGTGATGGCATTGGGAAGACTGTCATCACTGGCTCTGCTAGTGTCGGATTACAGGTCGGGATGACAACCTATAACTCTGCCACAGTAGGGGTTGTTGGGGATGGGTTCATGGCAAAGGATCTGACAATCGAAAACACAGCAGGTGCTAATGCACACCAAGCAGTAGCGTTCAGATCAGACAGTGATCTTTCTGTTATCGAGAATTGTGAATTCATAGGCAACCAAGATACTCTCTATGCTCAATCCCTGCGTCAGTTTTATAAATCTTGCCGTATTATAGGCAATGTGGATTTCATATTTGGAAACTCGGCTTCATTCTTCCAAGACTGCAAAATCCTAGTCCAGCCCAGGCAAGCAAGGCCAAAGAAAGGGGAGAACAATGCCGTTACTGCACATGGCAGAACAGATCCTGCTCAGTCTACCGGTTTTGTTTTCCACAACTGCTTGGTTAATGGTACTGAGAAATATATGGAATTGTACTATGAGAATCCTAAAGTACACAAGAACTATCTCGGAAGGCCATGGAAGGAGTATTCTAGAACAGTTTTTATTAAATCGTTCTTGGAAGCCTTAATCACGCCACAGGGTTGGTTGCCATGGAGTGGAGATGTTGGACTGAATACACTCTACTACGGGGAATTCGACAACTCTGGACCTGGTTCTAATTTGACCAAGAGAGTGTCCTGGAGTAGCCAGGTTCCTGCTGAACATGTGTCCACGTATTCCGTACAGGGTTTTATTCAAGGAGATGATTGGGTTCATCGTAGCAATTATTAG 1374 0.4512 MLNSILHASVGNHSRITAAKSCLQVFQYSHHRISLTVEALSRGRIKDARAFMSAALAYQYNCWSGLKYANDTQLVFKTMSFLDSLTNLSSNALSMILSYDLFGNDTDLWRPPRTERDGFWEDSGSGVFGAGPSVPVNLKPDVTVCKEKGSGCYGTVQEAVDAAPDNVDVGGGRFVIHIKEGVYEERVRVPLRKRNVVFLGDGIGKTVITGSASVGLQVGMTTYNSATVGVVGDGFMAKDLTIENTAGANAHQAVAFRSDSDLSVIENCEFIGNQDTLYAQSLRQFYKSCRIIGNVDFIFGNSASFFQDCKILVQPRQARPKKGENNAVTAHGRTDPAQSTGFVFHNCLVNGTEKYMELYYENPKVHKNYLGRPWKEYSRTVFIKSFLEALITPQGWLPWSGDVGLNTLYYGEFDNSGPGSNLTKRVSWSSQVPAEHVSTYSVQGFIQGDDWVHRSNY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04480 457 Pfam Pectinesterase 141 449 IPR000070 GO:0030599|GO:0042545
Trre6g04480 457 Gene3D - 135 457 IPR012334 -
Trre6g04480 457 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 98 IPR035513 -
Trre6g04480 457 SUPERFAMILY Pectin lyase-like 139 454 IPR011050 -
Trre6g04480 457 Pfam Plant invertase/pectin methylesterase inhibitor 15 95 IPR006501 GO:0004857
Trre6g04480 457 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 96 IPR035513 -
Trre6g04480 457 PANTHER PECTINESTERASE 15 453 - -
Trre6g04480 457 FunFam Pectinesterase 135 457 - -
Trre6g04480 457 CDD PMEI-like_3 1 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04480 Trre-Chr6 48117664 48119398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04480 2 455 Carbohydrate Esterase AT5G09760 66.304 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04480 - - gmx:100802102 723.005