Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04475 ATGGCTCCGGCAACCTCATCGCCTTCATCTTCAAAGCTAGCCAACTTCATCCACCGTACGCATACACCGCACAACCTCAAGAAGTTGCGACCGAAGAAGTACAGGTCGATGGCTGATATAATGGCAAGGGCGAGCTACGCGGTGGTGGAAAAAGAGGATTATGGTGGCATCATGTGTGAGCAATGTGGCTCCGGTAACAACTCGGAGGAGCTGCTGCTGTGTGACAAATGTGACAATGGTTTTCATATGAAATGCGTGAGACCAATTGTTGTCAGAATTCCGATTGGTTCGTGGATTTGCCCTAAGTGTTTAGGGACGAAGAAAGTGACAAAGTTCACTCAAAAGAAAATTCTAGATTTTTTCGGGATTCAGAGGGTGGATTTTAGAATGAATCTTTCTTCTTCTCAGGATGCTAGGAGGCGTCGGAGACGTCCAAGACCTCTGGTGTTACAGAAGAAAAGCAGGAAACTTTTACCATTTGTTCCTACAAAAGATTCTGATAGGAGATTGAAACAAATGGCTTCCCTTGCTTCGGCATTAAAAGCACTAAATATGGAATTCAGTAATCACTTGACGTATTTTCCAGGAATGGCTCCCAAATCTGCTAATCGATCCATTTTAGAAAACGGTGGCATGCAGTGTCTTACAAAGGAAGATGGGGAGACCTTAGAACGCTGCATAGCTATGACTAAGCGAGGCAAATTCCCTCCCTTAATGGTCGTTTATGATTCATGTCAAGGCTATACTGTGGAGGCTGATGGCCTAATCAAAGATATGACATTTATTGCTGAATACACTGGCGATGTGGATTATTTAAAGAAAAGAGAGTCTGATGACTGCGACAGTATGATGACGTTGCTTCTTGCAGCAGAAGGTGCTAACAGTCTTGTTATTTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACTCCGGAAGGTAGGAAGAAGCAAAACTGCAAATGTTTGAGATACAATGTTGATGGTGAATCTCGGGTCTTTTTGATTGCTACTCGAGATATTTTCGAGGGGGAGAGGCTATATTATGATTATAATGGTTATGAGAATCAATACTCAACTCATCATTTTGTCTGA 1113 0.4268 MAPATSSPSSSKLANFIHRTHTPHNLKKLRPKKYRSMADIMARASYAVVEKEDYGGIMCEQCGSGNNSEELLLCDKCDNGFHMKCVRPIVVRIPIGSWICPKCLGTKKVTKFTQKKILDFFGIQRVDFRMNLSSSQDARRRRRRPRPLVLQKKSRKLLPFVPTKDSDRRLKQMASLASALKALNMEFSNHLTYFPGMAPKSANRSILENGGMQCLTKEDGETLERCIAMTKRGKFPPLMVVYDSCQGYTVEADGLIKDMTFIAEYTGDVDYLKKRESDDCDSMMTLLLAAEGANSLVICADKRGNIARFISGINNHTPEGRKKQNCKCLRYNVDGESRVFLIATRDIFEGERLYYDYNGYENQYSTHHFV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04475 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 118 IPR013083 -
Trre6g04475 370 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 136 368 - -
Trre6g04475 370 SMART PHD_3 58 104 IPR001965 -
Trre6g04475 370 ProSiteProfiles SET domain profile. 236 358 IPR001214 GO:0005515
Trre6g04475 370 Pfam PHD-finger 58 104 IPR019787 -
Trre6g04475 370 CDD SET_ATXR5_6-like 233 370 - -
Trre6g04475 370 ProSitePatterns Zinc finger PHD-type signature. 59 103 IPR019786 -
Trre6g04475 370 CDD PHD_RSF1 58 103 - -
Trre6g04475 370 SUPERFAMILY SET domain 189 358 IPR046341 -
Trre6g04475 370 Pfam SET domain 273 358 IPR001214 GO:0005515
Trre6g04475 370 FunFam Histone-lysine N-methyltransferase ATXR5 141 370 - -
Trre6g04475 370 SUPERFAMILY FYVE/PHD zinc finger 49 111 IPR011011 -
Trre6g04475 370 ProSiteProfiles Zinc finger PHD-type profile. 56 106 IPR019787 -
Trre6g04475 370 Gene3D SET domain 141 370 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04475 Trre-Chr6 48086202 48089661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04475 58 111 C2H2 Transcription Factor Family AT3G01460 38.889 2.58e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g04475 SET 8.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04475 K24406 - gmx:100808815 538.495