Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04474 ATGGCTTCAACAACCTCATCCCCTTCATCTCCGAAGCTTGCTAGCTTCATCCGTGGCACGCAGACACCACACGACATTCAGAAGAAGTTGCGGATGAAGAAATATAGGTCCATGGATGATATCATGATAAGGGCGAGGTATGTGGTGCTTGAAAAGGAGGATTACAGTAGTACCATGTGTGAGCAATGTGGCTCCGGTGACAACCTAGAGGAGTTGCTACTGTGTGATAGATGTGACAATGGGTTTCACATAAAATGTGTGAGACCAATTGTTGTAAGAATTCCAATTGGACCGTGGATTTGCCTCAAATGTTCAGGCACGAAGAAAGTAACAGAGTTCACTGAAAAGGAAATTCTAAAGTTTTTCGGGATTCAAATGGAGGATTTCAGAATGAAAGTTTCTTCTCCCCATGATGCTAGGAGGCGTCGGAGACGTCCAAGACCTCTGGTGTTAAAAAAGAAAAGTAGGAGATTTTTACAATTTGTTCCTACAGAAGATCTTGATAGGAGACTGGAGCAAATGGCTTCTCTTGTTTTCGCTTTAATATCTTTGAATATGGAGTTTAGTAATCACCTGACATACATGGCTCCTAGATCTGCTAATCAATCAATTTTAGAAAATGGTAACATGCAGGCTCTTACTAAGGAAGATAGGAAGACCATAGAATGTTCCACAACAATGATTGAACGAGGCCAATTTCCTCCATTAATGGTCGTCTATGATTCATGCCAAGGTTATACTGTGGAGGCTGATGGTCCAATCAAGGACATGACATTTATTGCAGAATACACAGGAGATGTTGATTATCTAAAGAAAAGAGAATTTGATGATTGTGACAGTATGATGACACTGCTTCTTGCAGAAGATGGTGCTACTAGTCTTGTTATTTGTGCTGATAAACGTGCAAACATTGCTCGGTTTATTAGTGGCATCAACAATCATACTCTGGAAGGTAAGAAGAAACAAAACTGCAAATGTGTTAGATATAGCGTTGATGGGGAATCTCGGGTCTTTTTGGTTGCTACCCGAGATATTTCCAAAGGAGAGAAATTATATTATAATTACAATGGATATGAGAATCAATACCCAACTCATAATTTTGTTTGA 1107 0.3975 MASTTSSPSSPKLASFIRGTQTPHDIQKKLRMKKYRSMDDIMIRARYVVLEKEDYSSTMCEQCGSGDNLEELLLCDRCDNGFHIKCVRPIVVRIPIGPWICLKCSGTKKVTEFTEKEILKFFGIQMEDFRMKVSSPHDARRRRRRPRPLVLKKKSRRFLQFVPTEDLDRRLEQMASLVFALISLNMEFSNHLTYMAPRSANQSILENGNMQALTKEDRKTIECSTTMIERGQFPPLMVVYDSCQGYTVEADGPIKDMTFIAEYTGDVDYLKKREFDDCDSMMTLLLAEDGATSLVICADKRANIARFISGINNHTLEGKKKQNCKCVRYSVDGESRVFLVATRDISKGEKLYYNYNGYENQYPTHNFV 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04474 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 118 IPR013083 -
Trre6g04474 368 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 140 366 - -
Trre6g04474 368 SUPERFAMILY SET domain 188 356 IPR046341 -
Trre6g04474 368 ProSitePatterns Zinc finger PHD-type signature. 60 104 IPR019786 -
Trre6g04474 368 SMART PHD_3 59 105 IPR001965 -
Trre6g04474 368 Pfam PHD-finger 59 105 IPR019787 -
Trre6g04474 368 Pfam SET domain 276 356 IPR001214 GO:0005515
Trre6g04474 368 Gene3D SET domain 142 368 IPR046341 -
Trre6g04474 368 ProSiteProfiles Zinc finger PHD-type profile. 57 107 IPR019787 -
Trre6g04474 368 CDD SET_ATXR5_6-like 231 368 - -
Trre6g04474 368 SUPERFAMILY FYVE/PHD zinc finger 49 109 IPR011011 -
Trre6g04474 368 ProSiteProfiles SET domain profile. 234 356 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04474 Trre-Chr6 48076192 48078744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04474 30 112 C2H2 Transcription Factor Family AT3G01460 30.120 9.66e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g04474 SET 7.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04474 K24406 - gmx:100808815 471.855