Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04469 ATGGATGATATCATGGCAAGGGCGAGGTATGTGGTTCTTGAAAAGGAGGATTACAGTAGTACCATGTGTGAGCAATGTGGCTCCGGTGACAACCCAGAGGAGTTGCTACTATGTGATAGATGCGATAATGGGTTTCACATAAAATGTGTGAGACCAATTGTTGTAAGAATTCCAATTGGACCGTGGATTTGCCCCAAATGTTCAGGCACGAAGAAAGTAACAGAGTTCACTGAAAAGGAAATTCTAAAGTTTTTCGGGATTCAAATGGAGGATTTCAGAATGAAAGTTTCTTCTCCCCATGATGCTAGGAGGCGCCGGAGACGTCCAAGACCTATGGTGTTACAAAAGAAAAGCAGGAGACTTTTACAATTTGTTCCTACAGAAGATCGTGATAGGAGACTGAAACAAACGACTTCACTTGCTTCCGCTTTAACATATTTGAATATGGAGTTTAGTAATCACCTGACATACTGTTTACAGTAA 483 0.412 MDDIMARARYVVLEKEDYSSTMCEQCGSGDNPEELLLCDRCDNGFHIKCVRPIVVRIPIGPWICPKCSGTKKVTEFTEKEILKFFGIQMEDFRMKVSSPHDARRRRRRPRPMVLQKKSRRLLQFVPTEDRDRRLKQTTSLASALTYLNMEFSNHLTYCLQ 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04469 160 SMART PHD_3 22 68 IPR001965 -
Trre6g04469 160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 81 IPR013083 -
Trre6g04469 160 Pfam PHD-finger 22 68 IPR019787 -
Trre6g04469 160 Gene3D SET domain 105 160 IPR046341 -
Trre6g04469 160 ProSiteProfiles Zinc finger PHD-type profile. 20 70 IPR019787 -
Trre6g04469 160 ProSitePatterns Zinc finger PHD-type signature. 23 67 IPR019786 -
Trre6g04469 160 SUPERFAMILY FYVE/PHD zinc finger 13 72 IPR011011 -
Trre6g04469 160 CDD PHD_RSF1 22 67 - -
Trre6g04469 160 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04469 Trre-Chr6 48036497 48038315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04469 13 75 C2H2 Transcription Factor Family AT3G01460 36.508 5.75e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g04469 PHD 4.3e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04469 K24406 - gmx:100785817 204.527