Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04468 ATGAAGAAATATAGGTCCATGGATGATATCATGGCAAGGGCGAGGTATGTGGTTCTTGAAAAGGAGGATTACAGTAGTACCATGTGTGAGCAATGTGGCTCCGGTGACAACCCAGAGGAGTTGCTACTATGTGATAGATGCGATAATGGGTTTCACATAAAATGTGTGAGACCAATTGTTGTAAGAATTCCAATTGGACCGTGGATTTGCCCCAAATGTTCAGGCACGAAGAAAGTAACAGAGTTCACTGAAAAGGAAATTCTAAAGTTTTTCGGGATTCAAATGGAGGATTTCAGAATGAAAGTTTCTTCTCCCCATGATGCTAGGAGGCGCCGGAGACGTCCAAGACCTATGGTGTTACAAAAGAAAAGCAGGAGACTTTTACAATTTGTTCCTACAGAAGATCGTGATAGGAGACTGAAACAAACGACTTCACTTGCTTCCGCTTTAACATATTTGAATATGGAGTTTAGTAATCACCTGACATACTGTTTACAGTAA 501 0.4092 MKKYRSMDDIMARARYVVLEKEDYSSTMCEQCGSGDNPEELLLCDRCDNGFHIKCVRPIVVRIPIGPWICPKCSGTKKVTEFTEKEILKFFGIQMEDFRMKVSSPHDARRRRRRPRPMVLQKKSRRLLQFVPTEDRDRRLKQTTSLASALTYLNMEFSNHLTYCLQ 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04468 166 ProSitePatterns Zinc finger PHD-type signature. 29 73 IPR019786 -
Trre6g04468 166 SMART PHD_3 28 74 IPR001965 -
Trre6g04468 166 ProSiteProfiles Zinc finger PHD-type profile. 26 76 IPR019787 -
Trre6g04468 166 Pfam PHD-finger 28 74 IPR019787 -
Trre6g04468 166 Gene3D SET domain 111 166 IPR046341 -
Trre6g04468 166 PANTHER TRANSCRIPTION INTERMEDIARY FACTOR 28 116 - -
Trre6g04468 166 SUPERFAMILY FYVE/PHD zinc finger 19 78 IPR011011 -
Trre6g04468 166 CDD PHD_RSF1 28 73 - -
Trre6g04468 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04468 Trre-Chr6 48036479 48038315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04468 1 81 C2H2 Transcription Factor Family AT3G01460 30.000 5.27e-11 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre6g04468 PHD 4.6e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04468 K24406 - gmx:100808815 211.846