Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04458 ATGATGATGACGGTTGAGGAAGGGAGTGTGAGTTGTATGTATTGTCAGGTATTGTTGATTCCTGAAAGTGAGCAAGTTCAGCAAAATTTATGGAAAAGGGAAGTTGATGTTGAAGGAGTTGTGACTGGTGTAAGGGATCAAGGCAATTGTGGTAGTTTTTGGTCACTCTCTTCCAGTGGAGCCATAGAAGGAGTAAATGCAATAGTTACAGGATTATTGATGCTTGCGGTGTCACCATTGAGGAACACTAAAGATGAAATCCAAGGAGAGATGGAGAGTTTTTCGATTACAACCGATGACTTCGGTGACCTTTCCGATGGAAATTTATTGGAAAGCATTAACTTCGAAGACTTCTTTGTTAGCATCAACGTGGACAGAGACATTTTGCCCGATTTGGATATGGACTCGGAGATATTTGCCGAGTTCTCCGCCAATTATGGGGAGGAATCTAATATAAACTCATCTGCTATAAACAAAACGCATGAAAAGAATTATTCAAAAGACCAAGAAGACAAAACAATTTATTTGGGTCGTCAAGGTTCGGAAGAGACGGTGAGCAAAAGGGATGAATCTGTAGTTGTGAATCCTCCATTGCAAAAAGATGGTGGTGGGAAAGGAAAAAAATCATCAAGTCAATCTAAAAACGCTCAAGGGAAGAAAAAAGTCAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGGGTGGATAAAGCGGTGCCTTCAAGGATTTTGGAGCTTATGGAAATTGACTGTCTCACTCGCCATAACATTGCCGGTCATCTCCAGTGGCGGAGCTAG 822 0.4197 MMMTVEEGSVSCMYCQVLLIPESEQVQQNLWKREVDVEGVVTGVRDQGNCGSFWSLSSSGAIEGVNAIVTGLLMLAVSPLRNTKDEIQGEMESFSITTDDFGDLSDGNLLESINFEDFFVSINVDRDILPDLDMDSEIFAEFSANYGEESNINSSAINKTHEKNYSKDQEDKTIYLGRQGSEETVSKRDESVVVNPPLQKDGGGKGKKSSSQSKNAQGKKKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMEIDCLTRHNIAGHLQWRS 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04458 273 Gene3D Cysteine proteinases 19 80 - -
Trre6g04458 273 Gene3D - 218 273 - -
Trre6g04458 273 MobiDBLite consensus disorder prediction 185 223 - -
Trre6g04458 273 FunFam Two-component response regulator 217 272 - -
Trre6g04458 273 SUPERFAMILY Homeodomain-like 220 270 IPR009057 -
Trre6g04458 273 Pfam Papain family cysteine protease 38 71 IPR000668 GO:0006508|GO:0008234
Trre6g04458 273 NCBIfam myb-like DNA-binding domain, SHAQKYF class 221 270 IPR006447 GO:0003677
Trre6g04458 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 218 273 IPR017930 -
Trre6g04458 273 PANTHER TRANSCRIPTION ACTIVATOR GLK1 74 270 IPR044825 GO:0003700|GO:0045893
Trre6g04458 273 SUPERFAMILY Cysteine proteinases 35 74 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04458 Trre-Chr6 47889576 47899537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04458 74 270 G2-like Transcription Factor Family AT5G44190 39.906 2.40e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre6g04458 Peptidase_C1 6.4e-06 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04458 - - jre:109001455 244.973