Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04455 ATGGTTAGAGAAAAAAATGTTCATGATCTATGCATCACTGTTCCCACCTTCTTCAAATGTCCAATCTCATTAGATGTAATGAAATCCCCTGTTAGTCTCTGCACCGGAATCACCTACGACCGTTCCAGCATCCAACGCTGGTTAGACGATGGTAATAACACGTGTCCCGCTACCATGCAAACTCTCCACAGTAAAGATATTGTTCCTAACCGTACTCTACATAGTCTCATCCAGATCTGGACCGACTCGGTTCACCACCGGGTTAACCCACCCGTTTCACCTTCAGTTCCATCAAAAGAACAAGTTCTTCAAGCCATAACTGACTTAACCGATTCAAACGGTTTAAACCGGTTCGGTTTAATAACCAAAGTGAACCGTTTCGCTCAAGATTCCGATCAGAACAAAGCTTTTCTCGCGAAATTAGACGGTTTCGTTTCTCTGATGGTTAGTTTACTTGACAATGTCGACGGAAGCGTTGAATTTCTTGAACAAATTTTAACGGCGTTAGGTTTTGTTCTTGAAAAAATCGAAGATCATGAAGGATTGAAAAATCATTTGTTGAAAGGAAAGAACAAAAAATGCTTAGATTCTATGGTTCTCGTTTTGCAAAAAGGAAGTAACAATTCGAGAATCGCAACCGCTAGAGTTTTGAAATTCATCGCTATTGACGCTGAATCAGAGCTTCTAATCGGTGAGAATGAAGCTTTGGTAACCGAATTGTTAAATTTATCAACGCCGGAGAAAGATCCGAAGCTGATTGAAAATTGTTTATCGTGCTTAGTAGCAATTTCAAAGCCGAAACGGAACAAGATGAAGCTAGTGAAAATCGGAGCAATGAATATTTTATCGAAGTTATTAACAGAATCGAATATAAGCGTACCTGTGGTGGAAAAAGCGTTGAAGTTAGTTGAAACAGCGTCGTCGACGAGTGAAGGAAGAAAAGAGATTTGCGAAGATACAACTTGTGTGGCGGCGATATTGAATAAAGTTTTGAAGGTATCTAATGTTGCGACGGAACACGGCGTAACGACGCTGTGGAGTGTTTGTTATTTGTTTCGCGATCAGAAAGCACAAGAAGCGGTTACGCAAGCGAATGGATTAACGAAGATTTTGTTGCTAATACAGAGTAATTGTTCGCCACATGTTCGACAAATGTGTATGGATTTGCTTAAGATTTTTCGGGTTAATTCTACATCATGTCTTTCAAGTTATGATACAAAAACTTCTCATATTATGCCATTTTGA 1245 0.396 MVREKNVHDLCITVPTFFKCPISLDVMKSPVSLCTGITYDRSSIQRWLDDGNNTCPATMQTLHSKDIVPNRTLHSLIQIWTDSVHHRVNPPVSPSVPSKEQVLQAITDLTDSNGLNRFGLITKVNRFAQDSDQNKAFLAKLDGFVSLMVSLLDNVDGSVEFLEQILTALGFVLEKIEDHEGLKNHLLKGKNKKCLDSMVLVLQKGSNNSRIATARVLKFIAIDAESELLIGENEALVTELLNLSTPEKDPKLIENCLSCLVAISKPKRNKMKLVKIGAMNILSKLLTESNISVPVVEKALKLVETASSTSEGRKEICEDTTCVAAILNKVLKVSNVATEHGVTTLWSVCYLFRDQKAQEAVTQANGLTKILLLIQSNCSPHVRQMCMDLLKIFRVNSTSCLSSYDTKTSHIMPF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04455 414 PANTHER WDSAM1 PROTEIN 13 402 IPR045185 GO:0061630
Trre6g04455 414 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Trre6g04455 414 SUPERFAMILY ARM repeat 101 394 IPR016024 -
Trre6g04455 414 Gene3D - 93 403 IPR011989 -
Trre6g04455 414 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Trre6g04455 414 SUPERFAMILY RING/U-box 5 83 - -
Trre6g04455 414 FunFam RING-type E3 ubiquitin transferase 6 86 - -
Trre6g04455 414 Pfam U-box domain 14 82 IPR003613 GO:0004842|GO:0016567
Trre6g04455 414 CDD RING-Ubox_PUB 15 66 IPR045210 -
Trre6g04455 414 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04455 Trre-Chr6 47814294 47815538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04455 9 414 U-box Gene Family AT5G64660 50.239 1.57e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04455 - - gmx:100799627 534.643