Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04447 ATGTATGCTTCTACTTCCTATGTTTCACCACTCCTCCATGACCTTCTTGAAAATAATAATTTCCACTCAAGAAGGTTGCTCCTTCACTCCAATTTAGCCAACCCTCCAATTTCAACAAACATCCATGATTCAACTAAAGATTCATCATATCTTGGAGATGTTGTGATGAGTGGTGATCCATCTAACACTCCGGTTCGAGCAACAAACACTGGAATTAAGAAGAAAGCTCTCAAGTCATTCACCACGGTAAGTTACTCGACTGAGCTGAACTTGCCGAGTTTGAATTCAGAGTGTGTGATATGTTTATCGGAGTTCACTAATGGCGATAAAGTGCGCCTTTTGCCAAAGTGTAACCATGGTTTTCATGTTCGTTGCATTGACAAATGGTTAAGTTCACATTCGTCTTGTCCGAAATGTAGACAGTGCCTTATTGAGACTTGTAAAAAAATTGTTGGATCACGAAGTAGTTCATCTCAACCACAACCTATGTTGTTTCCGGTGCCGGAAACAATTGTAACTATAGCACCACTTGAGCCAGAAGGCTTGGTGAGAAACTATAGGGAGGTTAGCTAA 573 0.4066 MYASTSYVSPLLHDLLENNNFHSRRLLLHSNLANPPISTNIHDSTKDSSYLGDVVMSGDPSNTPVRATNTGIKKKALKSFTTVSYSTELNLPSLNSECVICLSEFTNGDKVRLLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCKKIVGSRSSSSQPQPMLFPVPETIVTIAPLEPEGLVRNYREVS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04447 190 SUPERFAMILY RING/U-box 76 145 - -
Trre6g04447 190 Pfam Ring finger domain 97 140 IPR001841 -
Trre6g04447 190 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Trre6g04447 190 CDD RING-H2_EL5-like 97 140 - -
Trre6g04447 190 PANTHER RING-H2 FINGER PROTEIN ATL78 63 182 IPR044602 GO:0016567|GO:0016740
Trre6g04447 190 SMART ring_2 98 139 IPR001841 -
Trre6g04447 190 FunFam RING-H2 finger protein ATL73 59 145 - -
Trre6g04447 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 144 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04447 Trre-Chr6 47762891 47763574 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04447 52 144 C3H Transcription Factor Family AT1G20823 50.000 7.18e-29 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04447 K19040 - gmx:100807227 233.417