Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04446 ATGGCTGCCATGAACTCAAGTGTATTGGCTTGTAGCTATGCCTTATCAGGTTGTTCTGAGCTCAATGCAAAGCTCATTTCTATGCCCTCTATTGCATCACCTGTAGGAGTTTCAGGTTCCAAGTTACCATTGATCAAAGCTCAGCAAGTGAGAGTTCCTGAAGCCAAAGAATCAAGACCAAGTGATGGTAGGAGAAATGCTATTGCTTTATTGGCAGCTACCCTTTTCACCACTGCTGTTTCTGCTTCCAATTCATCTGCTAATGCTAGTGTTTTTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAAAGATTAGCTACTAGTGGAGCAAACTTTGCAAGAGCATACACAGTGCAATTTGGTACTTGCAAGTTCCCTGAAAATTTCACTGGTTGTCAAGATCTTGCTAAACAGAAGAAAGTACCATTCATTTCTGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA 525 0.4019 MAAMNSSVLACSYALSGCSELNAKLISMPSIASPVGVSGSKLPLIKAQQVRVPEAKESRPSDGRRNAIALLAATLFTTAVSASNSSANASVFDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLELECEGKDKYKCGSNVFWKW 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04446 174 FunFam Photosystem I reaction center subunit N 90 174 - -
Trre6g04446 174 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 1 174 IPR008796 GO:0009522|GO:0015979
Trre6g04446 174 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 44 174 IPR008796 GO:0009522|GO:0015979
Trre6g04446 174 Gene3D - 90 174 IPR044907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04446 Trre-Chr6 47749827 47750966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04446 1 145 Calmodulin-binding Proteins AT5G64040 64.667 5.81e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04446 K02701 - tcc:18611871 271.166