Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04435 ATGACACTTCTTCTCCGAAAGAATCTTCTATTTTTCACTTCTTCACATTCTACATTTCAACCTCGCACACTTCTTCTCCGTCTTCAACTCTACGAATTTTCATCTGCTTCCACTCCGTATTCTCACTGGAAGCGTCACGATGAAGAGTCACGCAATGTTAGGGTTTCTGTTTGGTGGGATTTCGAGAACTGTACCGTGCCTGCTGGTGTTAATGTTTCCAAAGTAGCACCTGCTATCACTGGCGCCGTTAGAGCTAACGGAATTAAAGGTCCTGTTCATATTACTGCTTTCGGCGATGTTTTACAGCTTTCTAGATCCAATCAAGAAGCACTTACTTTCACTGGGATTCATCTTTCTCATATTCCCAATGGTGGAAAAAATAGTGCTGATAGATCTCTTCTTGTTGATCTTATGTATTGGGTTTCCCAAAATCCCCCGCCTGCACATCTCTTTCTGATATCTGGTGATAGAGACTTTGCTGGCATATTACACCGATTAAGGATGAACAACTACAATATCTTGCTTGCAATTCCCGGAAAGGCTCCTGATGTTCTTTGCAGTGCAGCAACCATAATGTGGCAGTGGAGTTCATTGCTCAAGGGAGAAAATCTAACTGGGAAGCATTTCAACCACCCACCTGATGGTCAGTTTGGTTCTTGGTATGGAAACTCTAAAGTGCCTCTTGAAAACCCCTTTTCAGCTGTCGAGCAGTCTCCATCTTCACAAAAAGTACAAATTGTGGAAATCAATGAACCTTCCTCAGACTTAAAGTCAGCTGGAGGAGAACCAAAGCCAGTTATGAGGATTATTAAGCATATATTGAGTTTACATCCAAATGGTATAACCATTGGAGATCTTCGTGAAGAGCTGGTAAAATGTAATGTGTCTTTGGGTAGAAACATATTTGGATATAAAAGGCTTCACCGCTTTCTATCAGCAATACCAAATGTACATCTCCAGGAATTAGGACATGGTAAGTTTTGTGTGAATTTGCTCCCCTCAGAGTCCCCCGAACCCTCTGAAAGCAGCACTAATCTATCAACGGCATCTGCTGTTGAGAATGAGGAGAGGGGCTACACAACAACTCCAAAGCTACACAGTGAAGATAAAGACATGGATACAGACGTATATAAGAGTCCTTCATTATATTCATTGCCGGGAAGGATCATTGAAGATGATTCAAAATCATTACAATCTATCCCTTCACATGGAAGACCTATCGAGGAAGATGTGCCGCATGTATCATCTGTAAACAGTGAGAAGGTTGTAGATGTGTCTAATGCACAACTGTTGGAGAGTCAACTTTCACCAAAGGACAATGATGTTTCAAAAACTGAGATTGGTTCCTTTGAAGTAAGATCTAAAAAGTTGTCTAATGATGACATTGTTAGGTCTTTGGATGCAAGTCCAAAAGTTCTTGAAGAGTATACTACTTCAGGGTATCCCTCTGCTGGTATTGATCAAACAATGGTGGAAAACAATAATATAGCAATTTATGAATCTGGAAAGGAGGTTGATGATCAAATCCCGTATTCTTCAGCAAAGAACAAACATGAGAACCAACCTAGAAACAAACATGAGAACCAACCTATAAAGGAGGTTGATGATCAAAGCCCATATTCTTCAGCAGCTGGTGACTCTCTGGTTGAGAAAAGACCCGATGGTGCTGAAACTTACAGCAAAAGATCAACTTTCTTTAACTGGATTAGAAATTGGTGGCCATTTTGGAAAAGCAATGCAAAGGATGATGATTTGACTGTTCATCAGAATAAGGTGACTAGTAATTTTGAGGATTCAAAGTTATCTGAACTGGACCAGACTGCTAGTAATCTTGAAGAGCCCAAACCATTAGAACCACACCAGGATGTCAGTCATTCTGGAAAGCCTGAGGACTCCAAGTTATCTGAACTAGACCAGACTGCTAATAATCTCAAAGAGCTCCAGCGATTTGAACCACACCAGGATGTCAATCAATCAGGAAAGCCTGTGTTATTTTCTAGTGGTTCCTTTTGGAATGAGATGGAATCTTTTGTTTTCAGCCCTAAAGGATCGCTTCTTATTTCCCAGTCTAGAAGCAGAGAGGATTTGGTTCGTAAATTTCAAAAGTATCAACCCATGGTTCTCAAATCTCTTACTGAAAATGATATCTTTCAATTGGTGGAATTGTTAATAGCAGAACAAAAATGGTTGGAGGAAAGCCCCTCACAAGCATTTCCTTTTAAACTAACTCGATCAGTTCAGAAGAGCGCGTCAGGCCTGACTAATGGTTCAAATAGTTTGAGATCTTTCTTTGTAAGTAGTAGAACATCGCAGTCCAACTTACAAAAGTCAGTTGAAAATGACGGGGAGAAACACACTCAGAGTATTCAGCAAACGGGAGTTCCAAGACTTGCCACTGAAAAGAAACATACCGAGAGGTCTAGAAGTGGTGTATTACAAGATTGTCAGAAATTGGTAACTGATATATCGAGGGAACATCCGGAGGGATATAATATAGGCTCTCTTCGAAGACAATTTAATGATAGATATGGCTATGAGCTTGACTTAAAGAAGCTTGGTTATAAGAAGATGGCACACTTGATACAGATAATGCCTGGGGTTAAACTCGAATCCAGTCATATTTATCCTTCTGATCCTGCTGTTTGTGCTTCTGACTCAGAAACTTCTATCCTCAAAACTCTAGCAACCAATGCCAGTCATGAAAAATTAAACTCAGATAATGAATTATCTGATACAGCCCCAAAAGAGTATAACATGGAATCTCCTTGGGAGGAATTAGGCCCTGTTTCTGCTAAAAACCTTGGTCAGAATGATCTGGAATCAAATTTAAGTCAGAAAGCAATCGAACTGGACACACCAAAAGGTCCTGATTATGAACCTATTGTCTTAGATTATGATTCTTCTGATACTGAAGGGGATAACTCTTGTGAAACTCAACCAGAAGATCAAGGAAAGCCAAAATATGATGAGCAAGACAGTTCTTTTTGGCAAGCTCTGGATTCCTGGCATAGCACCAAGGAAGAAGAGAATAGTGTCCAAAAATCCGAAAACATTGCTGACCTCAGCAATTCTCTGTTTGACATATTAAATTCATCCACAGAATCCAAACAGAGTGTTGTCGTTTCCAAAAATACTTTAGGGAATCATAGAGAAAAGCAAAGATCTCAAAAGTATTCATTTGTTGCTGACCCGGCCTTACCCCCCAACAAGGACATGCTTTTGGGTGGGATACTGGATGGCTTGAAGAAAGAGGATGAGTCAAAGATGCAAAACTGA 3276 0.402 MTLLLRKNLLFFTSSHSTFQPRTLLLRLQLYEFSSASTPYSHWKRHDEESRNVRVSVWWDFENCTVPAGVNVSKVAPAITGAVRANGIKGPVHITAFGDVLQLSRSNQEALTFTGIHLSHIPNGGKNSADRSLLVDLMYWVSQNPPPAHLFLISGDRDFAGILHRLRMNNYNILLAIPGKAPDVLCSAATIMWQWSSLLKGENLTGKHFNHPPDGQFGSWYGNSKVPLENPFSAVEQSPSSQKVQIVEINEPSSDLKSAGGEPKPVMRIIKHILSLHPNGITIGDLREELVKCNVSLGRNIFGYKRLHRFLSAIPNVHLQELGHGKFCVNLLPSESPEPSESSTNLSTASAVENEERGYTTTPKLHSEDKDMDTDVYKSPSLYSLPGRIIEDDSKSLQSIPSHGRPIEEDVPHVSSVNSEKVVDVSNAQLLESQLSPKDNDVSKTEIGSFEVRSKKLSNDDIVRSLDASPKVLEEYTTSGYPSAGIDQTMVENNNIAIYESGKEVDDQIPYSSAKNKHENQPRNKHENQPIKEVDDQSPYSSAAGDSLVEKRPDGAETYSKRSTFFNWIRNWWPFWKSNAKDDDLTVHQNKVTSNFEDSKLSELDQTASNLEEPKPLEPHQDVSHSGKPEDSKLSELDQTANNLKELQRFEPHQDVNQSGKPVLFSSGSFWNEMESFVFSPKGSLLISQSRSREDLVRKFQKYQPMVLKSLTENDIFQLVELLIAEQKWLEESPSQAFPFKLTRSVQKSASGLTNGSNSLRSFFVSSRTSQSNLQKSVENDGEKHTQSIQQTGVPRLATEKKHTERSRSGVLQDCQKLVTDISREHPEGYNIGSLRRQFNDRYGYELDLKKLGYKKMAHLIQIMPGVKLESSHIYPSDPAVCASDSETSILKTLATNASHEKLNSDNELSDTAPKEYNMESPWEELGPVSAKNLGQNDLESNLSQKAIELDTPKGPDYEPIVLDYDSSDTEGDNSCETQPEDQGKPKYDEQDSSFWQALDSWHSTKEEENSVQKSENIADLSNSLFDILNSSTESKQSVVVSKNTLGNHREKQRSQKYSFVADPALPPNKDMLLGGILDGLKKEDESKMQN 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04435 1091 PANTHER LIMKAIN B LKAP 38 821 IPR024768 GO:0005777|GO:0010468
Trre6g04435 1091 MobiDBLite consensus disorder prediction 334 377 - -
Trre6g04435 1091 ProSiteProfiles OST-type HTH domain profile. 262 333 IPR025605 -
Trre6g04435 1091 ProSiteProfiles OST-type HTH domain profile. 811 885 IPR025605 -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 513 533 - -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 612 636 - -
Trre6g04435 1091 Pfam NYN domain 54 189 IPR021139 GO:0004540
Trre6g04435 1091 CDD LOTUS 812 867 - -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 513 556 - -
Trre6g04435 1091 Gene3D - 46 196 - -
Trre6g04435 1091 CDD PIN_limkain_b1_N_like 54 178 - -
Trre6g04435 1091 Gene3D - 261 337 IPR041966 -
Trre6g04435 1091 Gene3D - 806 873 IPR041966 -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 335 357 - -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 359 376 - -
Trre6g04435 1091 Pfam OST-HTH/LOTUS domain 812 872 IPR025605 -
Trre6g04435 1091 Pfam OST-HTH/LOTUS domain 268 327 IPR025605 -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 950 993 - -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 774 809 - -
Trre6g04435 1091 MobiDBLite consensus disorder prediction 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04435 Trre-Chr6 47600895 47605631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04435 53 201 C2H2 Transcription Factor Family AT5G61190 45.638 1.45e-37 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04435 - - tpra:123916554 1823.14