Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04434 ATGGATTTGGACGATTTCCGATCGATTTTAGATACGGCGGGAGTTGACGTTTGGATGTTTATCGAAACCGCGATTTCCGTCGCTTCTATGGATAACGCCGGCGAGTTAAAGCGTAGAAGAGACGGAATCGTTGAACGACTTTACGCCGCCACGACTGCTGCTCCGGTATGTTTGAATTGCGACGGCGGTAACCGTCTCGTGAGTGATGGAAACCAAGTCAAAAAAGAGAATAGTCCTAGCTTAAGCCCTGAACGTCAACACCGCCGCGGCGGTGGTTCTCCTGCTACGCCGCAGTCTCAAGGAAACGACGACGGTGAAGATGAGGAGATAGATCCTTACGGTGGTTTGTTCGAGGATGAACAGAAGAAGATTCTAGAGATTAAGGAGCTTCTAGAAGATCCTCGCCAGTCTGAAGAATCTTTGATGGAGTTGCTGCAAAATCTGGTGGATATTGATATTACATTCCAAGAGTTGAAGGAAACTGACATCGGGAGGAACGTGAATCAGTTACGAAAACATCCATCAAGCGATGTTCGCCGATTGGTGAAGCTACTTGTCAAGAAGTGGAAAGAGATTGTGGATGAATGGGTTAAGCTGAATCCACAGGGAGGGAAAAACACTCTGATGGCTGATGGAGACTCACCATTGCAGAAAACCACCCCAAATGGGCATAATCATCAGATTCCTGATTTTGCGTACTCTCCAAATCCACACAATGGAAGTTCTGGTTCTGACCGTAACAATTCTGAAGTAGAACCAAAACCAAAACCTAAACCAGTTCCTCGTAAAGACCCACCTCCTAAACTAAGGCCATCACCTCCAGTTACTGCCCCTACTTCCAATACTCAAAATAGACAGAGAGAACAGAAAGAGAGCAATTTTGATGCGGAGCGGCTTGCTTCGGCAAGAAAACGGCTTCAAGCGAACTACAAAGAAGCTGAAAATGCCAAAAAGCAAAGAACAATTCAGGTGATGGACATACATGAGTTACCTAAGTCAAAAGCAAAGAATGGTTACTTTCCAAAGAACAGAGGTGGTGGCAGTTCTCAGGGAAGACAACACTGGTGA 1068 0.4588 MDLDDFRSILDTAGVDVWMFIETAISVASMDNAGELKRRRDGIVERLYAATTAAPVCLNCDGGNRLVSDGNQVKKENSPSLSPERQHRRGGGSPATPQSQGNDDGEDEEIDPYGGLFEDEQKKILEIKELLEDPRQSEESLMELLQNLVDIDITFQELKETDIGRNVNQLRKHPSSDVRRLVKLLVKKWKEIVDEWVKLNPQGGKNTLMADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNNSEVEPKPKPKPVPRKDPPPKLRPSPPVTAPTSNTQNRQREQKESNFDAERLASARKRLQANYKEAENAKKQRTIQVMDIHELPKSKAKNGYFPKNRGGGSSQGRQHW 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04434 355 MobiDBLite consensus disorder prediction 288 335 - -
Trre6g04434 355 Pfam TFIIS helical bundle-like domain 144 193 IPR017923 -
Trre6g04434 355 MobiDBLite consensus disorder prediction 249 265 - -
Trre6g04434 355 CDD TFIIS_I 121 194 - -
Trre6g04434 355 MobiDBLite consensus disorder prediction 201 355 - -
Trre6g04434 355 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 355 IPR044790 -
Trre6g04434 355 ProSiteProfiles TFIIS N-terminal domain profile. 119 196 IPR017923 -
Trre6g04434 355 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 117 205 IPR035441 -
Trre6g04434 355 MobiDBLite consensus disorder prediction 212 248 - -
Trre6g04434 355 SMART TFS2_5 124 195 IPR003617 GO:0005634
Trre6g04434 355 MobiDBLite consensus disorder prediction 69 113 - -
Trre6g04434 355 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 122 206 IPR035441 -
Trre6g04434 355 Coils Coil 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04434 Trre-Chr6 47590662 47592572 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Trre6g04434 Med26 5.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04434 - - aip:107622503 472.626