Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04414 ATGGATTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAAGACAAAGATTCTTCTAAGAAGAGGAGAGAAAGTAGCGATAAAACTGAAAGGAGTTACAGAAAGCGCGATGAGATCGAAGATGGAATCGAAGAGAAGCGGAGCAAGAGGTCTAGCGGCGGCGACGACGAGCATGTTTCCAGGAAGGATAGGGATCGTGATGATGAACGCGATAAGGAGCGTCATAGGAGTGGCAGAGATAGGGATAGAGACAGAGAGAGTGAGAGGAGTAGCAGAGATAGAGACAGAGATAGGGAGAAGGATAGGGACAGAGAGAGAGATAGGAGAGATAAGGACAAAGAGAGGGAGAGGAGGGTGAGGGAGAGAGAGAAGGAAAAGGAGAGAGAAAGGTCCCGGAGGAGTAAGAGTCGTTCTGAGCGAGATAGAGAGTTAGAACGAGAGGAGAGAGAGAGGTCTCGGAGAAGCATAAGTCGTTCTGAAAGAGAAAGAGAGAGAGAACGTGAGGAGAGGGAGAGGTCCAGGAGAAGCAGAAGCCGTTCCGAGCGCGATTTGGATTTGAGAGATAGCCGGAGATTTAGGGAGAAGAAAGAAGCAGCCGAGCCTGAGGCAGATCCAGAAAGGGATCAAAGAACTGTTTTTGCCTATCAGATGCCCTTAAAGGCAACAGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGAGATGTTCGGCTGATCATGGACAGGAACTCAAGACGATCTAAAGGAGTGGGGTATATTGAATTTTATGATGCAATGTCGGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTTGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAGAAGAACCTAGTTCAATCTAATACTACTGCTGGAGTTGCTGGTGTGACAGGACCATATGGAGCTGTGGACAGAAAACTTTATGTGGGGAACCTTCACTTCAATATGACTGAGAGCCAGTTGAGGGAGATTTTTGAGCCATTTGGTACTGTGGAGGTTGTGCAACTGCCTCTTGACCTGGAGACAGGACACTGCAAGGGTTTTGGGTTTATTCAATTTGCCCATCTAGAGCATGCCAAGGCTGCCCAGAGTTTAAATGGAAAATTAGAAATTGCTGGCCGAACTATCAAGGTTTCATCTGTAGCAGACCATGTTGGAAGCCAAGATACAACAGCAAAATCTGCAGACTTCGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGAATTGCTGCAAGCATTGGTTTACCTATAAATGGGTCAGCTCCTGCTCCGCAGACATTTAGTTTGCCTATTGGTAATCCTGGATTAATACCAGCACTAGCTCTACCAACTCAAATTATGCCTACCCAAGTTGCCGAACCTGTCGGAACCCCCAGCAACTGTTTACTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAGCCAGATTTTGATCTGGACATTAAAGAAGATGTAGAAGAAGAGTGTTCTAAATATGGACGGGTGAAGCATATCTATGTTGACAAAAACAGTGCAGGTTTTGTGTATTTGATGTTTGAAACGGTGGAAGCCGCAAGTGCTGCTCAGCGTGCAATGCACATGAGGTGGTTTGCACGAAAAATGATTTCAGCTATATACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 1737 0.4583 MDFDEYDYLEKTVEEQEDKDSSKKRRESSDKTERSYRKRDEIEDGIEEKRSKRSSGGDDEHVSRKDRDRDDERDKERHRSGRDRDRDRESERSSRDRDRDREKDRDRERDRRDKDKERERRVREREKEKERERSRRSKSRSERDRELEREERERSRRSISRSEREREREREERERSRRSRSRSERDLDLRDSRRFREKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTAGVAGVTGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVADHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPINGSAPAPQTFSLPIGNPGLIPALALPTQIMPTQVAEPVGTPSNCLLLKNMFDPTTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKNSAGFVYLMFETVEAASAAQRAMHMRWFARKMISAIYMQPQVYEAKFKGEV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04414 578 FunFam Splicing factor, CC1-like protein 479 578 - -
Trre6g04414 578 NCBIfam splicing factor, CC1-like family 96 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre6g04414 578 SUPERFAMILY RNA-binding domain, RBD 206 291 IPR035979 GO:0003676
Trre6g04414 578 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 574 IPR006509 GO:0003723|GO:0005634|GO:0006397
Trre6g04414 578 CDD RRM1_RBM39_like 214 286 - -
Trre6g04414 578 Gene3D - 145 300 IPR012677 -
Trre6g04414 578 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 408 502 IPR029123 -
Trre6g04414 578 SUPERFAMILY RNA-binding domain, RBD 315 567 IPR035979 GO:0003676
Trre6g04414 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 290 IPR000504 GO:0003723
Trre6g04414 578 CDD RRM3_RBM39_like 483 565 - -
Trre6g04414 578 MobiDBLite consensus disorder prediction 1 211 - -
Trre6g04414 578 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 393 IPR000504 GO:0003723
Trre6g04414 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 387 IPR000504 GO:0003723
Trre6g04414 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 282 IPR000504 GO:0003723
Trre6g04414 578 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 507 558 IPR000504 GO:0003723
Trre6g04414 578 FunFam Splicing factor CC1-like 299 404 - -
Trre6g04414 578 FunFam RNA-binding protein 39 isoform X1 206 298 - -
Trre6g04414 578 Coils Coil 145 186 - -
Trre6g04414 578 Gene3D - 479 577 IPR012677 -
Trre6g04414 578 SMART rrm1_1 214 286 IPR000504 GO:0003723
Trre6g04414 578 SMART rrm1_1 485 562 IPR000504 GO:0003723
Trre6g04414 578 SMART rrm1_1 316 389 IPR000504 GO:0003723
Trre6g04414 578 MobiDBLite consensus disorder prediction 12 211 - -
Trre6g04414 578 Gene3D - 311 407 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04414 Trre-Chr6 47373485 47381186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04414 287 388 Eukaryotic Initiation Factors Gene Family AT4G34110 34.951 4.59e-08 54.3