Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04412 ATGATATTTCCAGGTTTGAATAGAGATAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTTTCTGGAGATATTCCAATATCAAACGGTGGTGATAATAATATTCATTATAATGCAATTGAAGAAAGGCTTGGTTTTACATCAAATATTAACATGTCTTCTAGTTCTTCTTCTACAACAACAACAACACAATCTTTGTCTTCTTCATCTAATTATGTTGCTAGTTCTTCTCTCAAAAGAACTAGGGAAGAAGATGATAGATCTTTTGGTGATCAATTCTTGCTTCAAGGTGGTTACTCCCCTGCTTTGCCAACAACAAATGCAGAAAGTTCAAGAAATATTAGGACAACAACAACGAGAGTAACAACAACAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGAGAAGAGAAAATACAGAGGAGTAAGACAAAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGCAGCTGCTAGAGCTTATGATGAAGCTGCACTTCGTTTTAGAGGAAACAAAGCTAAACTTAATTTCCCTGAAAATGTTACTCTTCGTCACCCTCCAACAACTAGTAGTACTAATCAATGGAATGTTTCGAATTCGGTGAATTCGATTGTTTCTATTACAACTTCAACTGATCCTGTTGTTCATACTCGACCTTTTACTTCTTCTTCTTCTCAACCTTCAACCAATTTTTATGATTGTTTTCAGTTTTCGGGTATTCCTTCTACAACAAGGAATGTTTATGATGATAATGTGATTTTGACGTCTACGATGGCTTCCCATCTTCAATCATCGTCGTCACCAGCTTCCTCTTTGGCACCTTCTTCTATCCAAACAAATAATTCGATCTCTTCATTTTATAATTCTACCCAGTTGCCACTGTGGTCGGCTTCAGATCATAGCTCTTCTTCCTCTAAATGA 1011 0.365 MIFPGLNRDREMSAMISALTHIVSGDIPISNGGDNNIHYNAIEERLGFTSNINMSSSSSSTTTTTQSLSSSSNYVASSSLKRTREEDDRSFGDQFLLQGGYSPALPTTNAESSRNIRTTTTRVTTTREMGNAVYEYKRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPTTSSTNQWNVSNSVNSIVSITTSTDPVVHTRPFTSSSSQPSTNFYDCFQFSGIPSTTRNVYDDNVILTSTMASHLQSSSSPASSLAPSSIQTNNSISSFYNSTQLPLWSASDHSSSSSK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04412 336 MobiDBLite consensus disorder prediction 53 79 - -
Trre6g04412 336 MobiDBLite consensus disorder prediction 101 117 - -
Trre6g04412 336 PRINTS Ethylene responsive element binding protein signature 152 163 IPR001471 GO:0003700|GO:0006355
Trre6g04412 336 PRINTS Ethylene responsive element binding protein signature 174 190 IPR001471 GO:0003700|GO:0006355
Trre6g04412 336 SMART rav1_2 151 214 IPR001471 GO:0003700|GO:0006355
Trre6g04412 336 MobiDBLite consensus disorder prediction 53 89 - -
Trre6g04412 336 CDD AP2 151 210 IPR001471 GO:0003700|GO:0006355
Trre6g04412 336 MobiDBLite consensus disorder prediction 98 117 - -
Trre6g04412 336 ProSiteProfiles AP2/ERF domain profile. 151 208 IPR001471 GO:0003700|GO:0006355
Trre6g04412 336 Pfam AP2 domain 151 200 IPR001471 GO:0003700|GO:0006355
Trre6g04412 336 FunFam Ethylene-responsive transcription factor 2 150 209 - -
Trre6g04412 336 Gene3D AP2/ERF domain 150 210 IPR036955 GO:0003700|GO:0006355
Trre6g04412 336 SUPERFAMILY DNA-binding domain 151 209 IPR016177 GO:0003677
Trre6g04412 336 PANTHER DNA-BINDING DOMAIN 77 295 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04412 Trre-Chr6 47338830 47340390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04412 149 224 AP2-EREBP Transcription Factor Family AT5G61890 77.632 2.25e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g04412 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04412 - - mtr:11421690 377.096