Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04411 ATGTGTATGTTAAAGGTGGCGAATTCAAGAGACAAAGTTGTTATCAAAAGAGAAAATATAAATGAATCTCCAACATTGTCAAGTGAAATGATATTTCCAGGTTTGAATAGAGATAGAGAAATGTCTGCAATGATCTCAGCTTTGACTCATATTGTTTCTGGAGATATTCCAATATCAAACGGTGGTGATAATAATATTCATTATAATGCAATTGAAGAAAGGCTTGGTTTTACATCAAATATTAACATGTCTTCTAGTTCTTCTTCTACAACAACAACAACACAATCTTTGTCTTCTTCATCTAATTATGTTGCTAGTTCTTCTCTCAAAAGAACTAGGGAAGAAGATGATAGATCTTTTGGTGATCAATTCTTGCTTCAAGGTGGTTACTCCCCTGCTTTGCCAACAACAAATGCAGAAAGTTCAAGAAATATTAGGACAACAACAACGAGAGTAACAACAACAAGAGAAATGGGAAATGCAGTATATGAATATAAAAGAACAGAGAATGTAGTAAGAGAAGGAGAAGAGAAGAGAAAATACAGAGGAGTAAGACAAAGACCATGGGGAAAATGGGCTGCAGAGATAAGAGATCCATTCAAAGCAGCAAGAGTATGGTTAGGAACATTTGAAACAGCTGAAGCAGCTGCTAGAGCTTATGATGAAGCTGCACTTCGTTTTAGAGGAAACAAAGCTAAACTTAATTTCCCTGAAAATGTTACTCTTCGTCACCCTCCAACAACTAGTAGTACTAATCAATGGAATGTTTCGAATTCGGTGAATTCGATTGTTTCTATTACAACTTCAACTGATCCTGTTGTTCATACTCGACCTTTTACTTCTTCTTCTTCTCAACCTTCAACCAATTTTTATGATTGTTTTCAGTTTTCGGGTATTCCTTCTACAACAAGGAATGTTTATGATGATAATGTGATTTTGACGTCTACGATGGCTTCCCATCTTCAATCATCGTCGTCACCAGCTTCCTCTTTGGCACCTTCTTCTATCCAAACAAATAATTCGATCTCTTCATTTTATAATTCTACCCAGTTGCCACTGTGGTCGGCTTCAGATCATAGCTCTTCTTCCTCTAAATGA 1098 0.3607 MCMLKVANSRDKVVIKRENINESPTLSSEMIFPGLNRDREMSAMISALTHIVSGDIPISNGGDNNIHYNAIEERLGFTSNINMSSSSSSTTTTTQSLSSSSNYVASSSLKRTREEDDRSFGDQFLLQGGYSPALPTTNAESSRNIRTTTTRVTTTREMGNAVYEYKRTENVVREGEEKRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRHPPTTSSTNQWNVSNSVNSIVSITTSTDPVVHTRPFTSSSSQPSTNFYDCFQFSGIPSTTRNVYDDNVILTSTMASHLQSSSSPASSLAPSSIQTNNSISSFYNSTQLPLWSASDHSSSSSK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04411 365 SUPERFAMILY DNA-binding domain 180 238 IPR016177 GO:0003677
Trre6g04411 365 Pfam AP2 domain 180 229 IPR001471 GO:0003700|GO:0006355
Trre6g04411 365 MobiDBLite consensus disorder prediction 130 146 - -
Trre6g04411 365 SMART rav1_2 180 243 IPR001471 GO:0003700|GO:0006355
Trre6g04411 365 MobiDBLite consensus disorder prediction 82 108 - -
Trre6g04411 365 MobiDBLite consensus disorder prediction 82 118 - -
Trre6g04411 365 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700|GO:0006355
Trre6g04411 365 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700|GO:0006355
Trre6g04411 365 MobiDBLite consensus disorder prediction 127 146 - -
Trre6g04411 365 FunFam Ethylene-responsive transcription factor 2 179 238 - -
Trre6g04411 365 CDD AP2 180 239 IPR001471 GO:0003700|GO:0006355
Trre6g04411 365 ProSiteProfiles AP2/ERF domain profile. 180 237 IPR001471 GO:0003700|GO:0006355
Trre6g04411 365 PANTHER DNA-BINDING DOMAIN 106 323 IPR044808 GO:0003700|GO:0009873
Trre6g04411 365 Gene3D AP2/ERF domain 179 239 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04411 Trre-Chr6 47338830 47340477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04411 178 253 AP2-EREBP Transcription Factor Family AT5G61890 77.632 3.42e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre6g04411 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04411 - - mtr:11421690 409.453