Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04407 ATGAAACCCCCCTATATCACCAACACTCTCTTACTTCTCCTTTCTCTATTCCTCCTCCACTTAGCACCATGCCGTTGTGCTGGTTTTGAAAGAGACCTATCTTCTCAACTTCTCAACTTCAAACAATCTCTACCAAACCCATCACTTCTCCATGATTGGCTTCCAAACAATAACCCATGTTCATTCACAGGTATCACCTGCAACCAAACCACCATAACTTCCATACACCTTACTTCCATCCCTCTCAACATCAACCTCACCGTTATCGCCACCCATCTTCTCACCATCGACCACCTTCAAACCCTCACTCTCAAATCCACAAACCTTACTACTTCCTCTCCCATTTCACTCTCTCATTCTAAGTGCACTCCTTCACTCACCACCATAGATCTCTCACAAAACACTTTCTCTTCATCTTTCTCCGACTGGTCTTTTCTTTCTTCATGTTCATCTCTCAAATCTCTTAACCTTTCCAAAAACGGTATCCAATTTGATTCTCCTAAATGGAGTTTCAGTTCTTCTCTCCGGTTACTTGACCTTTCCGGTAACAAGCTAACCGGACCCGGTTTCTTTCCTTGGTTAATCAACCATGAGTTAGAGTTTTTATCTCTTGCGGGAAATAAAATCACCGGCGAAATCGACTTCTCCGGTTACACTTCTCTGCAGTATTTAAACCTTTCTGCAAATAATTTCAGTGTTTCTATTCCTTCTTTCGGTGAATGTTCTTCTCTTCAGTATCTTGACCTCTCTGCAAACAAGTACTTCGGCGACATTACCAGAACTCTTTCTCCTTGTAAGCTTCTTCTTCACCTCAACCTTTCCGATAACCAGTTCACCGGTCCGGTTCCTTTTATTCCCTCCGGTTCGATACAGTTTCTCTACCTTGCAAAAAACCACTTCGCCGGAAAAATTCCGGCGCGTCTTGCTGACCACTGCTCTTCTCTCGTGGAACTGGATCTTTCTTCTAACAATCTCACAGGTCCAATTCCACGCGAGTTCGGCGCGTGTAGTTTGTTGACGTCGTTGGACATTTCGAACAACATGTTCTCCGGGGAACTTCCGATGGAAGTTATAACGGAGATGAGTAGTTTGAAAGAACTTGTGGTTTCCTTTAACGAATTTTCCGGTGAATTTCCAGTGTCGTTGTCGAAGTTAACGGATTTAGAATCGTTAGATCTGAGTTCAAATAACTTCACCGGAACAATTCCTAATTGGATTTGTGAAGGAGAAATAGGAAATAATTTGAAGGGAATTTACTTGCAAAATAACCGTTTCACAGGTTTTATTCCACCAACGTTGAGTAACTGTTCTAACCTTGTTGCTCTTGATTTAAGCTTCAATTATTTGACCGGAACAATTCCTCCAAGTTTAGGTTCCCTTACGAAGCTTCGTGATTTGATTTTGTGGTTGAATCAGCTTCATGGTGAAATTCCTCAAGAGCTTCAAAATATGGAGAGTTTGGAGAATTTGATTCTTGATTTCAATGACTTGAGTGGAAGTATTCCTGATGGGCTAATGAATTGCACCAAGTTGAATTGGATCTCGCTTTCGAACAACAGGCTTAGCGGGGTGATTCCGAGGTCGATTGGGAAGCTTTCTAATCTTGCTATTTTGAAGCTGAGCAATAATACGATCTCTGGGGAGATTCCGCCGGAGCTTGGAGATTGCCCTAGTTTGTTATGGTTGGATCTGAATACAAATTTACTTACAGGAGCAATACCTCCTGCATTGTTCAAGCAAGCGGGGAAAATTGCGATTAATTACATTAGTAGCAAGCCGTATGTATACATTAAGAATGATGGTAGTAGAGGGTGTAATGGAGCTGGAAGCTTGTTGGAATTTGCAGGGATTAGTCAGCTGAAATTGAGTAGAATTTCGACGAGGAACCCTTGCAATTTCACTAGGGTTTATAAAGGTAGTCTTCAGCCAGTGTTTACTCTTAATGGTTCAATGATCTTTTTTGATATTTCACACAACAATTTGTCTGGTACTATTCCTAAGGAAATTGGTGAAATGCAATTTCTCTACATTTTGCATATGAGTCATAATCACTTATCTGGTATCATTCCTCAAGAGCTTGGTAAGATGAAGAATCTCAACATTCTTGATCTTTCATACAATGAGCTAGAGGGTCAAATTCCAGAAACCATGACTAAGCTTTCATTGCTCACTGAAATGTACTTGTCCAACAATTTTCTCTCCGGATCGATTCCAATGTCCGGTCAATTCGATACATTTCAGGCTGGTAGTTTTCAAAACAACTCTGGTCTTTGCGGTGGTCCTCTTCCTCCGTGTGGGCCGGACTCTGCAGCGGGTGCAACACGGCATCAGAAGTCTCATAGGAGACAGGCGTCACTTGCAGGGAGTGTGGCAATGGGATTGCTTTTCGCTCTTTTCTGTATTTTCGGCTTGATCCTCATTGCTGTTGAGACAAGGAAGAGGAGGAAGAAAAAGGAGGCTGCTATTGATGGCTACATTGAAAATTCTCATTCAGGTAATGGCAATAATTCTGGCTGGAAATATACCAGTGCCCGCGAAGCTCTCAGCATAAACCTCGCAACGTTTGAAAAGCCCCTTCGAAAGCTCACTTTTGCGGATCTTCTAGAGGCAACCAATGGCTTTCACAATGATAGTCTCATTGGTTCAGGTGGTTTCGGTGACGTGTATAAAGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAACTGATTCATGTTAGTGGACAAGGGGATAGAGAATTCACAGCTGAAATGGAAACCATTGGGAAAATCAAACACAGAAACCTTGTTCCTCTTCTTGGATACTGCAAAGTTGGGGAAGAAAGACTGTTGGTTTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTCCACGACCCGAAGAAAGCTGGAATCAAGATGAATTGGTCAGTGAGGAGGAAGATTGCAATTGGGGCTGCAAGGGGATTGGCTTTTCTTCATCATAGTTGTATCCCCCATATCATTCACAGGGACATGAAATCAAGCAATGTGTTGCTTGATGAAAATTTGGAAGCAAGGGTCTCTGATTTTGGAATGGCTAGGATGATGAGTGCCATGGATACCCATCTGAGCGTAAGCACGTTGGCTGGAACGCCGGGTTACGTCCCTCCAGAATACTATCAAAGCTTTAGATGCTCCACTAAAGGTGATGTTTATAGTTATGGTGTAGTTTTGCTGGAGTTGTTGACGGGGAAAAGACCAACGGATTCAGCTGATTTTGGTGATAACAATCTTGTTGGATGGGTTAAACAACATGCCAAACTTAAAATAAGTGATGTTTTTGATCAAGAGCTTATGAAAGAAGACCCCAATATGGAGATTGAGCTTTTGCAGCATTTAAAGGTAGCTTGTGCTTGTTTGGATGATAGACCTTGGAGGAGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATACAAGCAGGCTCTGGTGGTATTGATTCTCAATCTACTATAGCAGCTGAAGATGAAGGTTTCAATGCCATTGAAATGGTTGAAATGAGCATTAAAGAAGTCCCTGAATTAAGCAAGCACTAG 3567 0.4205 MKPPYITNTLLLLLSLFLLHLAPCRCAGFERDLSSQLLNFKQSLPNPSLLHDWLPNNNPCSFTGITCNQTTITSIHLTSIPLNINLTVIATHLLTIDHLQTLTLKSTNLTTSSPISLSHSKCTPSLTTIDLSQNTFSSSFSDWSFLSSCSSLKSLNLSKNGIQFDSPKWSFSSSLRLLDLSGNKLTGPGFFPWLINHELEFLSLAGNKITGEIDFSGYTSLQYLNLSANNFSVSIPSFGECSSLQYLDLSANKYFGDITRTLSPCKLLLHLNLSDNQFTGPVPFIPSGSIQFLYLAKNHFAGKIPARLADHCSSLVELDLSSNNLTGPIPREFGACSLLTSLDISNNMFSGELPMEVITEMSSLKELVVSFNEFSGEFPVSLSKLTDLESLDLSSNNFTGTIPNWICEGEIGNNLKGIYLQNNRFTGFIPPTLSNCSNLVALDLSFNYLTGTIPPSLGSLTKLRDLILWLNQLHGEIPQELQNMESLENLILDFNDLSGSIPDGLMNCTKLNWISLSNNRLSGVIPRSIGKLSNLAILKLSNNTISGEIPPELGDCPSLLWLDLNTNLLTGAIPPALFKQAGKIAINYISSKPYVYIKNDGSRGCNGAGSLLEFAGISQLKLSRISTRNPCNFTRVYKGSLQPVFTLNGSMIFFDISHNNLSGTIPKEIGEMQFLYILHMSHNHLSGIIPQELGKMKNLNILDLSYNELEGQIPETMTKLSLLTEMYLSNNFLSGSIPMSGQFDTFQAGSFQNNSGLCGGPLPPCGPDSAAGATRHQKSHRRQASLAGSVAMGLLFALFCIFGLILIAVETRKRRKKKEAAIDGYIENSHSGNGNNSGWKYTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKMNWSVRRKIAIGAARGLAFLHHSCIPHIIHRDMKSSNVLLDENLEARVSDFGMARMMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDQELMKEDPNMEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGGIDSQSTIAAEDEGFNAIEMVEMSIKEVPELSKH 1188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04407 1188 Gene3D Transferase(Phosphotransferase) domain 1 950 1151 - -
Trre6g04407 1188 SUPERFAMILY Protein kinase-like (PK-like) 860 1150 IPR011009 -
Trre6g04407 1188 FunFam Brassinosteroid LRR receptor kinase 950 1151 - -
Trre6g04407 1188 Pfam Leucine rich repeat N-terminal domain 37 68 IPR013210 -
Trre6g04407 1188 SUPERFAMILY L domain-like 643 762 - -
Trre6g04407 1188 Coils Coil 470 490 - -
Trre6g04407 1188 ProSitePatterns Protein kinases ATP-binding region signature. 880 903 IPR017441 GO:0005524
Trre6g04407 1188 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 410 587 - -
Trre6g04407 1188 CDD STKc_IRAK 880 1149 - -
Trre6g04407 1188 SMART serkin_6 874 1146 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04407 1188 ProSiteProfiles Protein kinase domain profile. 874 1149 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04407 1188 Gene3D - 587 647 - -
Trre6g04407 1188 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 194 409 - -
Trre6g04407 1188 SMART LRR_typ_2 484 508 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 672 695 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 696 720 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 532 556 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 385 409 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 557 580 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 460 483 IPR003591 -
Trre6g04407 1188 SMART LRR_typ_2 312 336 IPR003591 -
Trre6g04407 1188 Pfam Brassinosteroid receptor island domain 582 646 IPR045381 -
Trre6g04407 1188 Gene3D Ribonuclease Inhibitor 37 765 IPR032675 -
Trre6g04407 1188 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 410 1147 - -
Trre6g04407 1188 FunFam serine/threonine-protein kinase BRI1-like 2 835 949 - -
Trre6g04407 1188 Pfam Leucine rich repeat 675 731 IPR001611 GO:0005515
Trre6g04407 1188 Pfam Leucine rich repeat 293 348 IPR001611 GO:0005515
Trre6g04407 1188 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
Trre6g04407 1188 Pfam Leucine rich repeat 124 185 IPR001611 GO:0005515
Trre6g04407 1188 SUPERFAMILY L domain-like 124 335 - -
Trre6g04407 1188 SUPERFAMILY RNI-like 289 576 - -
Trre6g04407 1188 Pfam Leucine Rich Repeat 388 407 IPR001611 GO:0005515
Trre6g04407 1188 Pfam Protein kinase domain 874 1144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04407 1188 ProSiteProfiles Leucine-rich repeat profile. 220 242 IPR001611 GO:0005515
Trre6g04407 1188 ProSitePatterns Serine/Threonine protein kinases active-site signature. 996 1008 IPR008271 GO:0004672|GO:0006468
Trre6g04407 1188 Gene3D Phosphorylase Kinase; domain 1 835 949 - -
Trre6g04407 1188 Pfam Leucine Rich repeats (2 copies) 219 259 IPR025875 -
Trre6g04407 1188 PRINTS Leucine-rich repeat signature 315 328 - -
Trre6g04407 1188 PRINTS Leucine-rich repeat signature 696 709 - -
Trre6g04407 1188 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 648 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04407 Trre-Chr6 47279960 47283526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04407 36 1184 Receptor kinase-like Gene Family AT4G39400 66.122 0.0 1460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre6g04407 Pkinase 3.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04407 K13415 - gmx:100499629 1741.86