Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04406 ATGAAACCCCCCTATATCACCAACACTCTCTTACTTCTCCTTTCTCTATTCCTCCTCCACTTAGCACCATGCCGTTGTGCTGGTTTTGAAAGAGACCTATCTTCTCAACTTCTCAACTTCAAACAATCTCTACCAAACCCATCACTTCTCCATGATTGGCTTCCAAACAATAACCCATGTTCATTCACAGGTATCACCTGCAACCAAACCACCATAACTTCCATACACCTTACTTCCATCCCTCTCAACATCAACCTCACCGTTATCGCCACCCATCTTCTCACCATCGACCACCTTCAAACCCTCACTCTCAAATCCACAAACCTTACTACTTCCTCTCCCATTTCACTCTCTCATTCTAAGTGCACTCCTTCACTCACCACCATAGATCTCTCACAAAACACTTTCTCTTCATCTTTCTCCGACTGGTCTTTTCTTTCTTCATGTTCATCTCTCAAATCTCTTAACCTTTCCAAAAACGGTATCCAATTTGATTCTCCTAAATGGAGTTTCAGTTCTTCTCTCCGGTTACTTGACCTTTCCGGTAACAAGCTAACCGGACCCGGTTTCTTTCCTTGGTTAATCAACCATGAGTTAGAGTTTTTATCTCTTGCGGGAAATAAAATCACCGGCGAAATCGACTTCTCCGGTTACACTTCTCTGCAGTATTTAAACCTTTCTGCAAATAATTTCAGTGTTTCTATTCCTTCTTTCGGTGAATGTTCTTCTCTTCAGTATCTTGACCTCTCTGCAAACAAGTACTTCGGCGACATTACCAGAACTCTTTCTCCTTGTAAGCTTCTTCTTCACCTCAACCTTTCCGATAACCAGTTCACCGGTCCGGTTCCTTTTATTCCCTCCGGTTCGATACAGTTTCTCTACCTTGCAAAAAACCACTTCGCCGGAAAAATTCCGGCGCGTCTTGCTGACCACTGCTCTTCTCTCGTGGAACTGGATCTTTCTTCTAACAATCTCACAGGTCCAATTCCACGCGAGTTCGGCGCGTGTAGTTTGTTGACGTCGTTGGACATTTCGAACAACATGTTCTCCGGGGAACTTCCGATGGAAGTTATAACGGAGATGAGTAGTTTGAAAGAACTTGTGGTTTCCTTTAACGAATTTTCCGGTGAATTTCCAGTGTCGTTGTCGAAGTTAACGGATTTAGAATCGTTAGATCTGAGTTCAAATAACTTCACCGGAACAATTCCTAATTGGATTTGTGAAGGAGAAATAGGAAATAATTTGAAGGGAATTTACTTGCAAAATAACCGTTTCACAGGTTTTATTCCACCAACGTTGAGTAACTGTTCTAACCTTGTTGCTCTTGATTTAAGCTTCAATTATTTGACCGGAACAATTCCTCCAAGTTTAGGTTCCCTTACGAAGCTTCGTGATTTGATTTTGTGGTTGAATCAGCTTCATGGTGAAATTCCTCAAGAGCTTCAAAATATGGAGAGTTTGGAGAATTTGATTCTTGATTTCAATGACTTGAGTGGAAGTATTCCTGATGGGCTAATGAATTGCACCAAGTTGAATTGGATCTCGCTTTCGAACAACAGGCTTAGCGGGGTGATTCCGAGGTCGATTGGGAAGCTTTCTAATCTTGCTATTTTGAAGCTGAGCAATAATACGATCTCTGGGGAGATTCCGCCGGAGCTTGGAGATTGCCCTAGTTTGTTATGGTTGGATCTGAATACAAATTTACTTACAGGAGCAATACCTCCTGCATTGTTCAAGCAAGCGGGGAAAATTGCGATTAATTACATTAGTAGCAAGCCGTATGTATACATTAAGAATGATGGTAGTAGAGGGTGTAATGGAGCTGGAAGCTTGTTGGAATTTGCAGGGATTAGTCAGCTGAAATTGAGTAGAATTTCGACGAGGAACCCTTGCAATTTCACTAGGGTTTATAAAGGTAGTCTTCAGCCAGTGTTTACTCTTAATGGTTCAATGATCTTTTTTGATATTTCACACAACAATTTGTCTGGTACTATTCCTAAGGAAATTGGTGAAATGCAATTTCTCTACATTTTGCATATGAGTCATAATCACTTATCTGGTATCATTCCTCAAGAGCTTGGTAAGATGAAGAATCTCAACATTCTTGATCTTTCATACAATGAGCTAGAGGGTCAAATTCCAGAAACCATGACTAAGCTTTCATTGCTCACTGAAATGTACTTGTCCAACAATTTTCTCTCCGGATCGATTCCAATGTCCGGTCAATTCGATACATTTCAGGCTGGTAGTTTTCAAAACAACTCTGGTCTTTGCGGTGGTCCTCTTCCTCCGTGTGGGCCGGACTCTGCAGCGGGTGCAACACGGCATCAGAAGTCTCATAGGAGACAGGCGTCACTTGCAGGGAGTGTGGCAATGGGATTGCTTTTCGCTCTTTTCTGTATTTTCGGCTTGATCCTCATTGCTGTTGAGACAAGGAAGAGGAGGAAGAAAAAGGAGGCTGCTATTGATGGCTACATTGAAAATTCTCATTCAGGTAATGGCAATAATTCTGGCTGGAAATATACCAGTGCCCGCGAAGCTCTCAGCATAAACCTCGCAACGTTTGAAAAGCCCCTTCGAAAGCTCACTTTTGCGGATCTTCTAGAGGCAACCAATGGCTTTCACAATGATAGTCTCATTGGTTCAGGTGGTTTCGGTGACGTGTATAAAGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAACTGATTCATGTTAGTGGACAAGGGGATAGAGAATTCACAGCTGAAATGGAAACCATTGGGAAAATCAAACACAGAAACCTTGTTCCTCTTCTTGGATACTGCAAAGTTGGGGAAGAAAGACTGTTGGTTTATGAGTACATGAAATATGGAAGTCTAGAAGATGTCCTCCACGACCCGAAGAAAGCTGGAATCAAGATGAATTGTTATGGTGTAGTTTTGCTGGAGTTGTTGACGGGGAAAAGACCAACGGATTCAGCTGATTTTGGTGATAACAATCTTGTTGGATGGGTTAAACAACATGCCAAACTTAAAATAAGTGATGTTTTTGATCAAGAGCTTATGAAAGAAGACCCCAATATGGAGATTGAGCTTTTGCAGCATTTAAAGGTAGCTTGTGCTTGTTTGGATGATAGACCTTGGAGGAGACCTACAATGATTCAAGTCATGGCAATGTTCAAGGAAATACAAGCAGGCTCTGGTGGTATTGATTCTCAATCTACTATAGCAGCTGAAGATGAAGGTTTCAATGCCATTGAAATGGTTGAAATGAGCATTAAAGAAGTCCCTGAATTAAGCAAGCACTAG 3294 0.4177 MKPPYITNTLLLLLSLFLLHLAPCRCAGFERDLSSQLLNFKQSLPNPSLLHDWLPNNNPCSFTGITCNQTTITSIHLTSIPLNINLTVIATHLLTIDHLQTLTLKSTNLTTSSPISLSHSKCTPSLTTIDLSQNTFSSSFSDWSFLSSCSSLKSLNLSKNGIQFDSPKWSFSSSLRLLDLSGNKLTGPGFFPWLINHELEFLSLAGNKITGEIDFSGYTSLQYLNLSANNFSVSIPSFGECSSLQYLDLSANKYFGDITRTLSPCKLLLHLNLSDNQFTGPVPFIPSGSIQFLYLAKNHFAGKIPARLADHCSSLVELDLSSNNLTGPIPREFGACSLLTSLDISNNMFSGELPMEVITEMSSLKELVVSFNEFSGEFPVSLSKLTDLESLDLSSNNFTGTIPNWICEGEIGNNLKGIYLQNNRFTGFIPPTLSNCSNLVALDLSFNYLTGTIPPSLGSLTKLRDLILWLNQLHGEIPQELQNMESLENLILDFNDLSGSIPDGLMNCTKLNWISLSNNRLSGVIPRSIGKLSNLAILKLSNNTISGEIPPELGDCPSLLWLDLNTNLLTGAIPPALFKQAGKIAINYISSKPYVYIKNDGSRGCNGAGSLLEFAGISQLKLSRISTRNPCNFTRVYKGSLQPVFTLNGSMIFFDISHNNLSGTIPKEIGEMQFLYILHMSHNHLSGIIPQELGKMKNLNILDLSYNELEGQIPETMTKLSLLTEMYLSNNFLSGSIPMSGQFDTFQAGSFQNNSGLCGGPLPPCGPDSAAGATRHQKSHRRQASLAGSVAMGLLFALFCIFGLILIAVETRKRRKKKEAAIDGYIENSHSGNGNNSGWKYTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDPKKAGIKMNCYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDQELMKEDPNMEIELLQHLKVACACLDDRPWRRPTMIQVMAMFKEIQAGSGGIDSQSTIAAEDEGFNAIEMVEMSIKEVPELSKH 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04406 1097 ProSiteProfiles Leucine-rich repeat profile. 220 242 IPR001611 GO:0005515
Trre6g04406 1097 SMART LRR_typ_2 484 508 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 672 695 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 696 720 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 532 556 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 385 409 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 557 580 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 460 483 IPR003591 -
Trre6g04406 1097 SMART LRR_typ_2 312 336 IPR003591 -
Trre6g04406 1097 PRINTS Leucine-rich repeat signature 696 709 - -
Trre6g04406 1097 PRINTS Leucine-rich repeat signature 315 328 - -
Trre6g04406 1097 Pfam Leucine Rich Repeat 388 407 IPR001611 GO:0005515
Trre6g04406 1097 FunFam serine/threonine-protein kinase BRI1-like 2 835 949 - -
Trre6g04406 1097 SUPERFAMILY L domain-like 288 754 - -
Trre6g04406 1097 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 648 764 - -
Trre6g04406 1097 Pfam Leucine rich repeat 293 348 IPR001611 GO:0005515
Trre6g04406 1097 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Trre6g04406 1097 Pfam Leucine rich repeat 675 731 IPR001611 GO:0005515
Trre6g04406 1097 Pfam Leucine rich repeat 510 569 IPR001611 GO:0005515
Trre6g04406 1097 Pfam Leucine rich repeat 124 185 IPR001611 GO:0005515
Trre6g04406 1097 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 971 1056 - -
Trre6g04406 1097 Gene3D Transferase(Phosphotransferase) domain 1 950 1060 - -
Trre6g04406 1097 SUPERFAMILY L domain-like 47 302 - -
Trre6g04406 1097 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 194 409 - -
Trre6g04406 1097 Coils Coil 470 490 - -
Trre6g04406 1097 ProSiteProfiles Protein kinase domain profile. 874 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g04406 1097 ProSitePatterns Protein kinases ATP-binding region signature. 880 903 IPR017441 GO:0005524
Trre6g04406 1097 Gene3D - 587 647 - -
Trre6g04406 1097 Pfam Brassinosteroid receptor island domain 582 646 IPR045381 -
Trre6g04406 1097 Gene3D Phosphorylase Kinase; domain 1 835 949 - -
Trre6g04406 1097 Pfam Protein tyrosine and serine/threonine kinase 877 968 IPR001245 GO:0004672|GO:0006468
Trre6g04406 1097 Pfam Leucine Rich repeats (2 copies) 219 259 IPR025875 -
Trre6g04406 1097 SUPERFAMILY Protein kinase-like (PK-like) 856 1057 IPR011009 -
Trre6g04406 1097 Pfam Leucine rich repeat N-terminal domain 37 68 IPR013210 -
Trre6g04406 1097 Gene3D Ribonuclease Inhibitor 37 765 IPR032675 -
Trre6g04406 1097 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 410 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04406 Trre-Chr6 47279960 47283526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04406 36 970 Receptor kinase-like Gene Family AT4G39400 60.654 0.0 1055
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Trre6g04406 PK_Tyr_Ser-Thr 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04406 K13415 - gmx:100799772 1338.94