Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04401 ATGTCAACAACAAATATTGTTAACCACCATAGCTTATTTGATCAAGAGCAAGATCATGAGATCCATATGCAAACCGGGTTCAATATTCCTTTCCCTTCAAACATGACCTTACCTCCTTTAGGCAATTGCCATGATCAATCTTTGAAAGGTATTAGTGCAATAACTCATTCATCATCATCACTTTCTCCTGAAGCTGCAAATTTTGCTCAAACACTTCTTGCAACATCTGTTCAAAAACCGCGAGAATTTGAAGATCTCAATGATCTCACTTCTAGTTTTGGAGGAGCAGGCCAACTCCTTTCCTTGAACAGATCAAGAGGAAATTCATGGGCATGGGGAGATCAAGTAAGTGATTGTTTGATGAGTAAAAGAAGTAGTGTTGGAGATGATCATCATCAACATAATCATCATATAGGGATTTCTTCTACAATAAAAATGAAGAAAATGAAGGGAAGAAGGAAAGTGAGGGAGCCTAGGTTTTGCTTCAAGACTATGAGTGATGTGGATGTGTTGGATGATGGTTACAAATGGAGGAAGTATGGACAGAAAGTGGTCAAGAACACCCAGCATCCAAGAAGCTACTACCGTTGCACACAAGATAATTGTCGAGTAAAGAAACGTGTGGAGCGATTGGCTGAGGATCCAAGAATGGTGATAACCACATATGAAGGAAGACATGCTCATTCTCCATCAAATGAACTTGAAGATTCACAAACTCACTCTGAACTCACTAATTTCTTTTGGTAG 747 0.3909 MSTTNIVNHHSLFDQEQDHEIHMQTGFNIPFPSNMTLPPLGNCHDQSLKGISAITHSSSSLSPEAANFAQTLLATSVQKPREFEDLNDLTSSFGGAGQLLSLNRSRGNSWAWGDQVSDCLMSKRSSVGDDHHQHNHHIGISSTIKMKKMKGRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEDSQTHSELTNFFW 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04401 248 MobiDBLite consensus disorder prediction 225 248 - -
Trre6g04401 248 ProSiteProfiles WRKY domain profile. 166 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04401 248 Pfam WRKY DNA -binding domain 172 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04401 248 SUPERFAMILY WRKY DNA-binding domain 163 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04401 248 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 233 IPR044810 GO:0003700
Trre6g04401 248 Gene3D WRKY domain 158 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04401 248 FunFam WRKY transcription factor 57 157 231 - -
Trre6g04401 248 SMART WRKY_cls 171 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04401 Trre-Chr6 47252127 47254647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04401 138 248 WRKY Transcription Factor Family AT4G39410 78.448 2.07e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g04401 WRKY 6.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04401 - - gmx:100127389 320.087