Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04398 ATGGATATTAGCTATTTTGGAAACCCTAATCCTTCAAACCCTTATAATAATAATAATATAGTTCCTTCTTCTTCTTCATCTGATTTCATCATTAACTTATCTGATTATCTAGTGATTGATGATGTTGTTTTTGTTGATAATAATAATAATTATAATAATCAAGATCAGTATTACTCATCATGGTCACAAAGTTCAGAAACTGAACAATCATCAGATAAGGCAGCTTCTAGTTCCACCACCACCACTGATGTTGTCATTAATCAAGGATTAATTAGTGATGAAACCTCTATCAACAACAATAACATGACCACGACAACGACGATAAAGCGCAAAAATGGAGGGATTGAAGAAAATACAATAGAAGTGAGCCCAAAAATCACGTTTAGAACGCGATCGCAGCTTGAGATTATGGACGACGGATACAAATGGAGGAAGTATGGAAAGAAGTCAGTCAAGAATAGTCCAAATCCAAGGAACTATTATAAGTGTTCAGGAGAAAGATGTGGAGTTAAGAAAAGAGTGGAAAGGGATAGAGAAGACTCAAGCTACGTTCTAACAACTTATGAAGGTGTCCACACTCATGAGTCCCCATGCACTTCTTACTACACTAGTCCAGTGTCTTCTAATTTGATCTATTCCAATCAATGGCCTTTTGCAATTTCATCATCTTCTAATTAA 678 0.3525 MDISYFGNPNPSNPYNNNNIVPSSSSSDFIINLSDYLVIDDVVFVDNNNNYNNQDQYYSSWSQSSETEQSSDKAASSSTTTTDVVINQGLISDETSINNNNMTTTTTIKRKNGGIEENTIEVSPKITFRTRSQLEIMDDGYKWRKYGKKSVKNSPNPRNYYKCSGERCGVKKRVERDREDSSYVLTTYEGVHTHESPCTSYYTSPVSSNLIYSNQWPFAISSSSN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04398 225 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04398 225 SMART WRKY_cls 137 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04398 225 Pfam WRKY DNA -binding domain 138 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre6g04398 225 Gene3D WRKY domain 124 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre6g04398 225 FunFam WRKY transcription factor 57 123 197 - -
Trre6g04398 225 MobiDBLite consensus disorder prediction 59 81 - -
Trre6g04398 225 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 200 IPR044810 GO:0003700
Trre6g04398 225 SUPERFAMILY WRKY DNA-binding domain 129 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04398 Trre-Chr6 47231302 47232796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04398 3 208 WRKY Transcription Factor Family AT5G64810 37.864 2.76e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre6g04398 WRKY 1.7e-22 CL0274