Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04395 ATGGAATTGGTCGCCGGTAAGCTCCACCACCTCGACCTCACCGGAGCATTCATTCTAGATTCACGACGCATACCACGCACCCTATCTCATACTCATCTAACCGCCAAATCCAACACTAACACTAATTTAGTTTATCCCAATCGATTATTTACCTCAAAAAAACCTAATTACACTTCACGATTATCCGCTGTTACCGCCGTCGAAGACACTCCAGTAACAGAAGACGATATCGAGTCTCTATTTTCCGATACTTCAGCCGATGAACGACGTGGAAACAACAAACAATCGAATACAGGCGCTTCAACCGTTTCTTCCGGTGTGAAATTGGAAAATATAAGTAAAACTTATAAAGGTGTTACGGTTTTGAAAGAGGTTAATTGGGAAGTGAAAAAAGGAGAGAAAGTTGGTTTGGTTGGTGTTAATGGTGCGGGGAAAACGACTCAGATGAGGATTATTGCTGGTCTTGAAGAACCGGATTCGGGTAATGTGATAAAAGCGAAACCGAATATGAAAATTGCGTTTTTGAGTCAAGAATTTGAGGTATCACAGAGTAGGACTGTGAGGGAGGAGTTTATGAGTGCTTTTAAAGAGGAAATGGAGGTTGCTGGAAGGTTGGAGAAAGTGCAGAAGGCTCTTGAGGGTTCTGTTAATGATTTGGAGTTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGACGAGCACAAGCTGTTAATTTGGATGTTGTTGATTCAAAGATTAGTAAATTGATGCCTGAACTTGGTTTTGGTATCGAGGATTCGGATAGGTTGGTTGCTTCTTTTAGTGGTGGATGGCAGATGAGGATGTGTCTTGGCAAGATTCTACTTCAGGAACCAGATTTGTTGTTGTTAGATGAACCCACTAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGCCTATCTTAATAAGCAGGATGTGCCGATGGTTATCATTTCCCACGACAGAGCTTTTCTTGATCAACTATGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAATTATTCTCAGTATATACTTTCAAAGGCAACTTGGATTGAAACACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAGAGAGTTGATAAGTAGGTTAGGTGCCGGAGCAAGCTCAGGCCGTGCTTCTTCCGCTGAGAAGAAATTGGAAAAACTTCTGGGAGACGAACTAGTAGAGAAGCCATTTGAACGGAAACAAATGAAAATTAGGTTCCCTGTGCGTGGAAGCAGTGGAAGATCTGTTGTAACAGTTAGGAACTTGGATTTTGGCTTTGAGGATAAAACACTTTTCAACAAGGCAAATCTTACGATTGAAAGGGGAGAAAAGATTGCCATTCTCGGTCCAAATGGATGTGGCAAGAGTACTTTACTAAAATTGATTATGGGTTTAGAGAAGCCAACTGGCGGTGAAGTTATCCTTGGGGAGCATAATATATTGCCTAACTATTTTGAGCAGAATCAGGCTGAGGCGCTTGATCTGGAAAAGACAGTGCTTCAGACAGTAGAGGAAGTTGCAGAGGACTGGAGGAGCGACGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGTAAAGTTTCTCTATTGAGTGGCGGTGAGAAGGCACGGCTGGCTTTCTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTTTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTCGAGGAGGCAATAACAGCTTATGAGGGCACAGTTATCACAGTATCTCATGATAGGTACTTTATAAAGCAGATAGTTAATAGAGTGATTGAAGTAAAAGATGGCGATTTACAGGATTATGCTGGGGATTATAATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGGGAGCTTGAACGCCAGGCAGAGCTTGAGGACAAAGCTCCTAAATTGAAAGCCAAATCTAAGATGTCCAAGGCTGAGAAAGAAGCAAGGAAGAAACAAAAGATGCAGGCCTTTCAGGCAGGAAAACAGAAGTCTAAAAGTGCAAAAAACTCAAAAAGATGGAATTGA 2106 0.4141 MELVAGKLHHLDLTGAFILDSRRIPRTLSHTHLTAKSNTNTNLVYPNRLFTSKKPNYTSRLSAVTAVEDTPVTEDDIESLFSDTSADERRGNNKQSNTGASTVSSGVKLENISKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVAGRLEKVQKALEGSVNDLELMGRLLDEFDLLQRRAQAVNLDVVDSKISKLMPELGFGIEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEAYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASSAEKKLEKLLGDELVEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKTLFNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPTGGEVILGEHNILPNYFEQNQAEALDLEKTVLQTVEEVAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAITAYEGTVITVSHDRYFIKQIVNRVIEVKDGDLQDYAGDYNYYLEKNLDARERELERQAELEDKAPKLKAKSKMSKAEKEARKKQKMQAFQAGKQKSKSAKNSKRWN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04395 701 Gene3D - 103 388 IPR027417 -
Trre6g04395 701 MobiDBLite consensus disorder prediction 651 701 - -
Trre6g04395 701 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 106 695 - -
Trre6g04395 701 FunFam ABC transporter ATP-binding protein 394 661 - -
Trre6g04395 701 Gene3D - 398 663 IPR027417 -
Trre6g04395 701 SMART AAA_5 458 626 IPR003593 GO:0016887
Trre6g04395 701 SMART AAA_5 131 346 IPR003593 GO:0016887
Trre6g04395 701 Pfam ABC transporter 450 581 IPR003439 GO:0005524
Trre6g04395 701 MobiDBLite consensus disorder prediction 81 104 - -
Trre6g04395 701 ProSitePatterns ABC transporters family signature. 269 283 IPR017871 GO:0005524|GO:0016887
Trre6g04395 701 Pfam ABC transporter 122 297 IPR003439 GO:0005524
Trre6g04395 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 342 IPR027417 -
Trre6g04395 701 CDD ABCF_EF-3 107 337 - -
Trre6g04395 701 CDD ABCF_EF-3 434 625 - -
Trre6g04395 701 FunFam Putative ABC transporter ATP-binding component 108 392 - -
Trre6g04395 701 Pfam ABC transporter 336 423 IPR032781 -
Trre6g04395 701 Coils Coil 645 681 - -
Trre6g04395 701 ProSitePatterns ABC transporters family signature. 553 567 IPR017871 GO:0005524|GO:0016887
Trre6g04395 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 639 IPR027417 -
Trre6g04395 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 107 365 IPR003439 GO:0005524
Trre6g04395 701 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 434 649 IPR003439 GO:0005524
Trre6g04395 701 MobiDBLite consensus disorder prediction 651 681 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04395 Trre-Chr6 47216596 47221619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04395 431 651 Calmodulin-binding Proteins AT2G36910 26.721 3.40e-12 68.2