Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04391 ATGGCACCAAAGCAAAGAACAGCTAGAGTTACCCGTAACCCTGAATTGATCAGGGGTATCGGTAAATACTCTAGGTCTACCATGTACCACAAGAGAGGTCTCTGGGCTATTAAGGCCAAGCACGGCGGCGCTTTCCCTCGTCATGATCCCGTCGCTAAGCCTGAAACTCCCGCTGTCAAGCCTCCTAAATTCTACCCTGCTGATGATGTCAAGAAGCCCCTACGTAACAAACACAAACCAAAACCCACTAAGCTCAGGGCTAGCATTACTCCTGGCACAGTGTTGATTCTTCTGGCTGGAAGATTCAAGGGAAAGAGAGTTGTGTTTCTCAAACAGCTTCCTTCTGGACTTCTTCTCGTAACCGGTCCATTCAAGATTAACGGAGTTCCTTTGAGGCGTGTGAATCAGGCTTATGTTATCGGAACATCAACCAAAGTAGACATTTCTTCGGTTAATGTTGATAAGTTTGATGACAAGTACTTTTCTAAGGAATCCCACAAAAAGACAAAGAAGGGCGAGGGAGAGTTCTTTGAGGCAGATAAGGAGGATAAAAAAGTTCTCCCCCAGGAAAAGAAGGACGACCAGAAGACTGTCGATGCTGGTTTGTTAAAAGCCATCGAGAGTGTTCCCGACTTGAAGACTTACCTAGGTGCCAGGTTTTCCTTGAAGGCTGGTGTGAAGCCTCATGAGTTACTCTTTTAG 702 0.4615 MAPKQRTARVTRNPELIRGIGKYSRSTMYHKRGLWAIKAKHGGAFPRHDPVAKPETPAVKPPKFYPADDVKKPLRNKHKPKPTKLRASITPGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESHKKTKKGEGEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIESVPDLKTYLGARFSLKAGVKPHELLF 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04391 233 CDD KOW_RPL6 81 233 IPR041997 -
Trre6g04391 233 Gene3D - 87 171 IPR014722 -
Trre6g04391 233 MobiDBLite consensus disorder prediction 48 85 - -
Trre6g04391 233 PANTHER 60S RIBOSOMAL PROTEIN L6 6 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
Trre6g04391 233 FunFam 60S ribosomal protein L6 87 171 - -
Trre6g04391 233 SUPERFAMILY Translation proteins SH3-like domain 87 176 IPR008991 -
Trre6g04391 233 Pfam Ribosomal protein L6, N-terminal domain 3 58 IPR005568 GO:0003735|GO:0005840|GO:0006412
Trre6g04391 233 Pfam Ribosomal protein L6e 126 233 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04391 Trre-Chr6 47184955 47186621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04391 1 233 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 79.399 2.83e-120 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04391 K02934 - gmx:100809343 404.445