Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g04381 ATGCTTGGTGTTGTTGTTGTTGTTTTCGGCCGAGAAGAAGAAATGGGTGAGGGGGAGCGTAGAAGAATCTTCCATGGAGTTGTACTAATCATCTTGATCCCACCTCGAACTCCACTATTCATTCTTAATACTGCCTATGATTCATGGCATATCCAGTCAAGCTTAGCTCCTCCATCGGAAGATCCTCACGGCTATTGGCACGATTGCAGATTAAACCATGCTAAATGTACCGGTTCACAAATCCAATTTCTGCAAGGATTCAGGAATCACATGCTGAATGTTGTTAGAGGCTTCTCAAGATCAAATCAAAATGGATTGTTCATAAATTCATGCTTTGCTCACTGCCAATCTGAGACGCAAGACACATGGTTTGCCGACAACTCTCCTGTCTTTGGGAACAAGAAATACAAATGGAGATCAAATGGCCAAAATCAGAAATACAAATTGAATAACTCTTTCCCTTTCTGTAGTTACAGTTCTTTGTGA 486 0.4115 MLGVVVVVFGREEEMGEGERRRIFHGVVLIILIPPRTPLFILNTAYDSWHIQSSLAPPSEDPHGYWHDCRLNHAKCTGSQIQFLQGFRNHMLNVVRGFSRSNQNGLFINSCFAHCQSETQDTWFADNSPVFGNKKYKWRSNGQNQKYKLNNSFPFCSYSSL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g04381 161 PANTHER NOTUM-RELATED 36 139 IPR004963 GO:0016787
Trre6g04381 161 Pfam Pectinacetylesterase 36 136 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g04381 Trre-Chr6 47108387 47110774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g04381 36 134 Carbohydrate Esterase AT5G26670 72.727 4.19e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g04381 K19882 - gmx:100810716 193.356